I found the issue was filed by yihui half month ago on github,
https://github.com/Bioconductor/BiocStyle/issues/18, and the solution is
quite intuitive by removing those un-supported paramters (self_contained,
lib_dir, output_dir). Hope it will be fixed soon.
On Wed, Nov 23, 2016 at 2:25 PM, Leon
Hi,
I haven't been able to find a way to report a bug on a package directly,
so I'm hoping this is the best way to report a bug, and my apologies in
advance if it isn't.
Rgraphviz fails to install on little-endian, 64-bit PowerPC (ppc64le).
Attempting to install leads to this error message:
...
Guangchuang, you can see at
https://github.com/Bioconductor/BiocStyle/issues/19 (the main github
repo for this package) that this issue is already been reported and
will be addressed asap by BiocStyle's maintainer.
On Tue, Nov 22, 2016 at 9:46 PM, Yu, Guangchuang wrote:
>
> Dear all,
>
> I recomp
Dear all,
I recompile my package and it throw the following error when building
vignettes:
unused arguments (self_contained, lib_dir, output_dir)
I search ?opts_knit, and couldn't find these parameters.
In ?opts_knit, I find *self.contained* instead of *self_contained*.
I remove the dependenc
Hi Ramon,
All packages (including ggrepel) were re-installed from scratch after we
updated R on the release build machines one week ago. However it seems
that re-installing ggrepel on Mac doesn't help. On morelia:
> install.packages("ggrepel")
--- Please select a CRAN mirror for use in this sess
Thanks Leo. This should be fixed now - the url format needed to be updated.
Valerie
On 11/18/2016 08:17 AM, Leonardo Collado Torres wrote:
> Hi Valerie,
>
> Thanks! I do see the badges now but the percent reported seems off.
> Particularly:
>
> * http://bioconductor.org/packages/release/bioc/htm
Dear All,
Sorry to return to this issue, but on Morelia (Mac OS X, stable), we are
still seeing packages break during build with this message
"GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted"
that affec
We are making some updates to the single package builder. It may be
unavailable at times during the process.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
This email message ma
