Dear all, I recompile my package and it throw the following error when building vignettes:
unused arguments (self_contained, lib_dir, output_dir) I search ?opts_knit, and couldn't find these parameters. In ?opts_knit, I find *self.contained* instead of *self_contained*. I remove the dependency of BiocStyle and recompile my package and it works. I search the source code of BiocStyle, and find the issue in https://github.com/Bioconductor-mirror/BiocStyle/blob/master/R/html_document.R#L66-L70 Now rmarkdown:::pandoc_html_highlight_args (in latest release version 1.2) only accepts template and highlight parameters. This will fail the compilation of many Bioconductor packages. Please fix it. Using ::: is not recommended by Bioconductor and will not passed by BiocCheck (if I remember it correctly). But I find several packages by Bioconductor core team use it. Best wishes, Guangchuang -- --~--~---------~--~----~------------~-------~--~----~ Guangchuang Yu, PhD Candidate State Key Laboratory of Emerging Infectious Diseases School of Public Health The University of Hong Kong Hong Kong SAR, China www: https://guangchuangyu.github.io -~----------~----~----~----~------~----~------~--~--- [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
