[Bioc-devel] A bug in TxDb.Hsapiens.UCSC.hg38.knownGene?

2016-10-16 Thread zhao shilin
Dear BioC team, I think I found something incorrect in TxDb.Hsapiens.UCSC.hg38.knownGene, and reported in https://support.bioconductor.org/p/88232/ but didn't get reply. I think it is a bug, so decided to send it via email to let you know. I am using the developing version of TxDb.Hsapiens.UCSC.

Re: [Bioc-devel] Version on GitHub mirror different than Bioconductor

2016-10-16 Thread Martin Morgan
On 10/15/2016 08:56 PM, Raymond Cavalcante wrote: I noticed that v0.99.20 on the Bioc build servers have an error because of a missing file (inst/extdata/test_annotations_6_tx_gene_symbol.bed). Oddly, that file is present in rcavalcante/annotatr v0.99.20 (added in commit acc43cb), but didn't m