[Bioc-devel] Interoperability between DataFrame and dplyr?

2015-04-23 Thread Ryan C. Thompson
Hi all, So, dplyr is a pretty cool thing, but it currently works with data.frame and data.table, but not S4Vectors::DataFrame. I'd like to change that if possible, and I assume that this would "simply" involve writing some glue code. However, I'm not really sure where to start, and I expect t

[Bioc-devel] BioC 2015 Bioconductor Annual Conference

2015-04-23 Thread Martin Morgan
BioC 2015, the Bioconductor Annual Conference, is taking shape, and registration is open! Please visit the conference web site http://bioconductor.org/help/course-materials/2015/BioC2015/ and registration page https://register.bioconductor.org/BioC2015/ for more information. See you in S

[Bioc-devel] New-package: bamsignals

2015-04-23 Thread Alessandro Mammana
Dear all, we are excited to announce the availability of the new package "bamsignals". The purpose of this package is to ease the calculation of read counts from BAM files by skipping the step of loading the reads in R: the counting functions in bamsignals take as arguments a path to a BAM file and