Dear all, we are excited to announce the availability of the new package "bamsignals". The purpose of this package is to ease the calculation of read counts from BAM files by skipping the step of loading the reads in R: the counting functions in bamsignals take as arguments a path to a BAM file and a GenomicRanges object with the regions of interest. Even though we tried to make bamsignals as flexible as possible, there are infinite ways of counting reads. So let us know if you are interested in possible enhancements or if you have any suggestions. There is also a github repository bridged to the svn repository: https://github.com/lamortenera/bamsignals .
Happy coding! Ale -- Alessandro Mammana, PhD Student Max Planck Institute for Molecular Genetics Ihnestraße 63-73 D-14195 Berlin, Germany _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
