Re: [Bioc-devel] new package: canceR

So use mclust to fit a mixture model? (for one gene or exprs%*%coefs) e.g. mc <- Mclust(exprScoreOrWhatever) plot( survfit( Surv(EFS, EFSevent) ~ mc$class ) ) This is from memory but done often. Seems not too hard to add...? --t > On Mar 26, 2015, at 9:00 PM, Dario Strbenac > wrote: > > An

Re: [Bioc-devel] new package: canceR

An analysis that biologists would be interested in is a Kaplan-Meier analysis with a survival time plot. Can the package do this ? It's the most obvious way to integrate gene expression (allow the samples to be put into a low expression and high expression group, based on a threshold) and clinic

[Bioc-devel] new package: canceR

Dear All, I am pleased to announce the release of new package named canceR . The main goal of this package is to facilitate to NOT R user the access of complex cancer genomics data hosted by the MSKCC and available through cgdsr CRAN

Re: [Bioc-devel] request to create BSgenome Bos_taurus_UMD3.1.1

Hi Byungkuk, On 03/25/2015 10:17 PM, Byungkuk Min wrote: Dear Dr.Pages, I've been trying to build a BSgenome for Bos_taurus_UMD3.1.1 from NCBI . But I'm getting the same error message... library(BSgenome) forgeBSgenomeDataPkg("/PATH/TO/ge