So use mclust to fit a mixture model? (for one gene or exprs%*%coefs) e.g.
mc <- Mclust(exprScoreOrWhatever) plot( survfit( Surv(EFS, EFSevent) ~ mc$class ) ) This is from memory but done often. Seems not too hard to add...? --t > On Mar 26, 2015, at 9:00 PM, Dario Strbenac <dstr7...@uni.sydney.edu.au> > wrote: > > An analysis that biologists would be interested in is a Kaplan-Meier analysis > with a survival time plot. Can the package do this ? It's the most obvious > way to integrate gene expression (allow the samples to be put into a low > expression and high expression group, based on a threshold) and clinical > data, but I don't see how it could be done with canceR. > > -------------------------------------- > Dario Strbenac > PhD Student > University of Sydney > Camperdown NSW 2050 > Australia > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
