Re: [Bioc-devel] unexpected build and check error

2014-04-04 Thread Luo Weijun
Dan, Thanks for the followup. That’s wired. I use R 3.0.0 here. It is different from R-3.1.0, but I don’t think it would make such a difference in generating the error below: Error in bods[idx, "id.type"] : subscript out of bounds I run the exact same build command on my local machine (as below)

[Bioc-devel] Bioconductor support for R-3.1.0 on Mavericks (Mac OS X 10.9)

2014-04-04 Thread Dan Tenenbaum
Hi all, (This concerns Mac users only; the rest of you do not need to read this.) When R-3.1.0 is released on April 10 you will notice that there are two flavors of R available for download for the Mac: a version built on Snow Leopard (Mac OS 10.6) and a version built on Mavericks (Mac OS X 10.

Re: [Bioc-devel] A question on IRanges package

2014-04-04 Thread Martin Morgan
On 04/03/2014 06:17 PM, Yuan Luo wrote: A side question, in the frame 3, what does .local mean? local environment? like if I go into frame 3, I'd be able to print out their values? (I'm only the messenger) .local is a nested function created when a method adds arguments to the generic. After

Re: [Bioc-devel] Bioconductor packages for R-3.1.0 beta on OSX 10.9

2014-04-04 Thread Dan Tenenbaum
Hi Diego, - Original Message - > From: "Diego Diez" > To: "bioc-devel" > Sent: Friday, April 4, 2014 12:44:20 AM > Subject: [Bioc-devel] Bioconductor packages for R-3.1.0 beta on OSX 10.9 > > Dear all, > > sorry if double posting this. I sent it two days ago using a > different > email

[Bioc-devel] Bioconductor packages for R-3.1.0 beta on OSX 10.9

2014-04-04 Thread Diego Diez
Dear all, sorry if double posting this. I sent it two days ago using a different email not registered at bioc-devel and it seems (as for the archives) it has not reached destination. FYI, it seems the OSX build R 3.1.0 beta has split into snowleopard and mavericks builds: http://r.research.att.c