Dear all, sorry if double posting this. I sent it two days ago using a different email not registered at bioc-devel and it seems (as for the archives) it has not reached destination.
FYI, it seems the OSX build R 3.1.0 beta has split into snowleopard and mavericks builds: http://r.research.att.com When installing the later and trying to install Bioconductor I get the following: > source("http://bioconductor.org/biocLite.R";) Warning: unable to access index for repository http://www.bioconductor.org/packages/2.14/bioc/bin/macosx/mavericks/contrib/3.1 package 'BiocInstaller' is available as a source package but not as a binary 'biocLite.R' failed to install 'BiocInstaller', use 'install.packages("BiocInstaller", repos="http://www.bioconductor.org/packages/2.14/bioc";)' Warning message: package 'BiocInstaller' is not available (for R version 3.1.0 beta) then did the following: > install.packages("BiocInstaller", + repos="http://www.bioconductor.org/packages/2.14/bioc",type="source";) trying URL 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/BiocInstaller_1.13.3.tar.gz' Content type 'application/x-gzip' length 14183 bytes (13 Kb) opened URL ================================================== downloaded 13 Kb * installing *source* package 'BiocInstaller' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Bioconductor version 2.14 (BiocInstaller 1.13.3), ?biocLite for help * DONE (BiocInstaller) The downloaded source packages are in '/private/var/folders/dm/96krztk175d19vx9rcsgd2qc0000gn/T/RtmpMt3iRo/downloaded_packages' and after that did: > biocLite() Error: 'no packages in repository (no internet connection?)' while trying http://bioconductor.org/packages/2.14/bioc which failed, presumably because the new repository structure is not yet supported? this did not work either: > biocLite(type="source") Best, Diego > sessionInfo() R version 3.1.0 beta (2014-03-31 r65343) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale: [1] C/UTF-8/C/C/C/C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.13.3 loaded via a namespace (and not attached): [1] tools_3.1.0 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
