On Thu, Feb 13, 2014 at 1:12 PM, Martin Morgan wrote:
> On 02/13/2014 08:09 AM, Sean Davis wrote:
>
>> Hi, Martin.
>>
>> How difficult would it be to include insertions/deletions in seq and qual
>> in the applyPileups method for PileupFiles? The use case is to look at
>> the
>> context around va
On 02/13/2014 08:09 AM, Sean Davis wrote:
Hi, Martin.
How difficult would it be to include insertions/deletions in seq and qual
in the applyPileups method for PileupFiles? The use case is to look at the
context around variants for increases mismatch rates. Indels will have a
small impact on su
Hi, Martin.
How difficult would it be to include insertions/deletions in seq and qual
in the applyPileups method for PileupFiles? The use case is to look at the
context around variants for increases mismatch rates. Indels will have a
small impact on such calculations, but for completeness it wou
- Original Message -
> From: "Dan Tenenbaum"
> To: "J. Hettling"
> Cc: bioc-devel@r-project.org
> Sent: Thursday, February 13, 2014 8:08:16 AM
> Subject: Re: [Bioc-devel] daily build problems, how to debug?
>
>
>
> - Original Message -
> > From: "J. Hettling"
> > To: bioc-de
- Original Message -
> From: "J. Hettling"
> To: bioc-devel@r-project.org
> Sent: Thursday, February 13, 2014 4:29:21 AM
> Subject: [Bioc-devel] daily build problems, how to debug?
>
> Dear Bioconductor developers,
>
> since updating our package 'BiGGR' on the development branch, the
>
Hannes,
I think (but don't know) that there is something happening with the build
servers these days. The Windows machine has disappeared. This sometimes
happens and I would just wait a day or two. Perhaps the build team can
comment?
Best,
Kasper
On Thu, Feb 13, 2014 at 8:58 AM, Cristobal Fr
Hi Hannes,
Are you using the "*R devel engine*" installed in zin2 (R Under development
(unstable) (2014-01-15 r64790) -- "Unsuffered Consequences")? and then
installed "*devel BiocLite 2.14*"?
Regards,
Cristobal
2014-02-13 9:29 GMT-03:00 Hettling, J. :
> Dear Bioconductor developers,
>
> sinc
Dear Bioconductor developers,
since updating our package 'BiGGR' on the development branch, the daily built
gives errors
(see
http://www.bioconductor.org/checkResults/2.14/bioc-LATEST/BiGGR/zin2-buildsrc.html).
However, on both of my machines R CMD build and R CMD check run without
problems (o
