[Bioc-devel] New Bioconductor package: ArrayTV

2013-09-30 Thread Eitan Halper-Stromberg
Hi All, A new package for mitigating the appearance of waves (ArrayTV) in microarray data is now available. The idea is to first find the windows around probes that best captures the dependence of signal intensity on GC content, and then to perform correction based upon these optimal windows. The

[Bioc-devel] Proof-of-concept parallel preloading FastqStreamer

2013-09-30 Thread Ryan
Hi all, I have previously written an Rscript to read, filter, and write large fastq files using FastqSteamer to read. Through some complicated tricks, I was able to get the input to happen in parallel with the processing and output (using parallel::mcparallel and friends). In other words, whi