Re: [Bioc-devel] GenomicFeatures LoadDb Path

2013-08-09 Thread Marc Carlson
On 08/08/2013 07:00 PM, Dario Strbenac wrote: It's not documented by ?loadDb, but providing an absolute path doesn't work, and shows an unusual error message. genes17 <- loadDb("/nb/dario/genes/gencode17.db") Error in loadDb(file, dbType, dbPackage, ...) : error in evaluating the argument

Re: [Bioc-devel] *Ranges paper published

2013-08-09 Thread Tim Triche, Jr.
congratulations, expect a small mountain of citations to quickly accumulate. as Kasper put it in his slides (whence I learned how to use IRanges and GRanges), "These two packages are themselves compelling arguments for learning R!" I've still never met anyone who would like to go back to the "old

[Bioc-devel] lmdme: Linear Models for Designed Multivariate Experiments

2013-08-09 Thread Cristobal Fresno Rodríguez
Dear list, I'm sharing with you an R library that we have lunched in Bioconductor a couple of month ago. This package allows you to perform ANOVA decomposition and PCA analysis (APCA) or ANOVA-Simultaneous Component Analysis (ASCA) in addition with PLS analysis over the Residual/Coefficients Matri

[Bioc-devel] RDAVIDWebService: Set Enrichment Analysis in DAVID through R

2013-08-09 Thread Cristobal Fresno Rodríguez
Dear list, A new R library has been recently launched to Bioconductor. This library allows to perform DAVID analysis via R in a programmatic way, facilitating its automatic use. It also add some new capabilities not included in DAVID platform such as Direct Acyclic Graph visualization of enriched

[Bioc-devel] FYI--"Input on Development and Analysis Methods and Software for Big Data"

2013-08-09 Thread Sean Davis
A little off-topic, I know NHGRI has released a new RFI. There are a number of folks on this list that may have input they want to share, so I am forwarding along the Notice: http://grants.nih.gov/grants/guide/notice-files/NOT-HG-13-014.html Sean ___