Re: [Bioc-devel] problem installing biocLite package

2013-06-25 Thread Dan Tenenbaum
On Tue, Jun 25, 2013 at 9:12 AM, Marinus Pennings wrote: > Hello, > > I initially sent this email to the regular bioconductor mailing list > but they told me I probably should sent it here. > Actually, what was suggested was to come up with a minimal test case and email the R-devel list (http

Re: [Bioc-devel] AnnotationHubServer requires AnnotationHubData of a particular vintage

2013-06-25 Thread Dan Tenenbaum
On Tue, Jun 25, 2013 at 9:30 AM, Tim Triche, Jr. wrote: > I've been having this problem for a while with the package: > > tim@tim-ThinkPad-T420s:~/bioc-devel$ more > /home/tim/bioc-devel/AnnotationHubServer.Rcheck/00install.out > * installing *source* package ‘AnnotationHubServer’ ... > ** R > **

[Bioc-devel] AnnotationHubServer requires AnnotationHubData of a particular vintage

2013-06-25 Thread Tim Triche, Jr.
I've been having this problem for a while with the package: tim@tim-ThinkPad-T420s:~/bioc-devel$ more /home/tim/bioc-devel/AnnotationHubServer.Rcheck/00install.out * installing *source* package ‘AnnotationHubServer’ ... ** R ** inst ** preparing package for lazy loading Error in match.fun(FUN) : n

[Bioc-devel] problem installing biocLite package

2013-06-25 Thread Marinus Pennings
Hello, I initially sent this email to the regular bioconductor mailing list but they told me I probably should sent it here. I'm installing some bioclite packages for one of our users. Config params are R version: 3.0.1 build with: intel composerxe version 13 using mkl I installed using t

Re: [Bioc-devel] BiocParallel: BatchJobs backend (Was: Re: BiocParallel)

2013-06-25 Thread Michel Lang
Hi Henrik, Sorry for the late response. Suggestions and feedback are always welcome. I just forgot to enable the issue tracker (now enabled). For prototyping I usually use Interactive/Multicore, but I'll regularly test on our local clusters which use Torque or Slurm, respectively. Michel 2013/6