[Bioc-devel] RFC: IntervalTrees for GRanges objects

2013-04-02 Thread Hector Corrada Bravo
Hello bioc-develers, I'm writing an application where lots findOverlap calls are made on static GRanges objects. For IRanges we can create persistent IntervalTree objects that would serve the multiple overlap query use-case. There is no equivalent for GenomicRanges objects, so I'm proposing an imp

Re: [Bioc-devel] Bioconductor coding standards

2013-04-02 Thread Martin Morgan
On 04/02/2013 05:09 PM, Hervé Pagès wrote: Hi Ulrich, On 04/02/2013 09:37 AM, Martin Morgan wrote: On 04/02/2013 09:04 AM, Alejandra Gonzalez-Beltran wrote: Hi Ulrich, While not for Bioconductor, this Google's R style guide might be useful: http://google-styleguide.googlecode.com/svn/trunk/g

Re: [Bioc-devel] Bioconductor coding standards

2013-04-02 Thread Hervé Pagès
Hi Ulrich, On 04/02/2013 09:37 AM, Martin Morgan wrote: On 04/02/2013 09:04 AM, Alejandra Gonzalez-Beltran wrote: Hi Ulrich, While not for Bioconductor, this Google's R style guide might be useful: http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html Bioc doesn't dictate co

[Bioc-devel] Biggest Fake Conference in Computer Science

2013-04-02 Thread newtonhanes
We are researchers from different parts of the world and conducted a study on the world’s biggest bogus computer science conference WORLDCOMP ( http://sites.google.com/site/worlddump1 ) organized by Prof. Hamid Arabnia from University of Georgia, USA. We submitted a fake paper to WORLDCOMP 20

Re: [Bioc-devel] Bioconductor coding standards

2013-04-02 Thread Martin Morgan
On 04/02/2013 09:04 AM, Alejandra Gonzalez-Beltran wrote: Hi Ulrich, While not for Bioconductor, this Google's R style guide might be useful: http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html Bioc doesn't dictate coding style. The use of '.' in any kind of symbol is poten

Re: [Bioc-devel] Bioconductor coding standards

2013-04-02 Thread Alejandra Gonzalez-Beltran
Hi Ulrich, While not for Bioconductor, this Google's R style guide might be useful: http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html Best wishes, Alejandra On 26 March 2013 11:48, Sean Davis wrote: > On Tue, Mar 26, 2013 at 7:27 AM, Ulrich Bodenhofer < > bodenho...@bioi