Hello bioc-develers, I'm writing an application where lots findOverlap calls are made on static GRanges objects. For IRanges we can create persistent IntervalTree objects that would serve the multiple overlap query use-case. There is no equivalent for GenomicRanges objects, so I'm proposing an implementation for this.
Please check http://github.com/hcorrada/GenomicIntervalTree There's a first cut implementation there you can test by installing this skeleton package. E.g, > library(devtools) > install_github("GenomicIntervalTree", username="hcorrada", subdir="pkg") > library(GenomicIntervalTree) Let me know what you think. Cheers, Hector _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
