3D - scatter plot using GD::* ?

2008-02-23 Thread I BioKid
Dear all, Is there any module related to perl GD::Graph / GD::Graph::3D that can be used to generate a 3D scatter plot in xyz plane using set of x/y/z values as input ? Many thanks in advance, ibiokid

Parse html files

2007-11-13 Thread I BioKid
Hey all, I have around 1000 html files, I got it using different web crawling programs. I need to save this and use it as a part of a database. But all the files have links to cgi programs. All these CGI links are mentioned as /cgi-bin/foo/foo.pl as path. I dont have local copy of these programs a

Perl-cgi execution problem

2007-05-10 Thread I BioKid
Dear All, We are developing a web server, actually an email based server. The server should do the following : 1. Accept email and a data file from user 2. Give a resopnse to user as input and emai recieved and submit process in backend and run it at the same time the html page should complete

Problem with Fcntl.pm in a compiled(perlcc) Perl-cgi program

2007-02-07 Thread I BioKid
Dear All, I have a compiled perl-cgi program (using perlcc compiled on a 32bit Linux Machine), now I have moved my program to another machine (64bit). Now I am not able to run the program. In the error_log I am getting the error : Can't locate Fcntl.pm. But Fcntl.pm is there, When tried : locat

Re: C language and bioinformatics

2007-02-03 Thread I BioKid
Hi, Perl is the preffered language for basic bioinformatics programng, say seqeuence (manipulation) and structure analysis is much more easier in perl than in any other language. Now a days python is also favoured by computational biologists looking in to the sequence data. We have lots of module

InterOperate between a cluster and a web server

2007-01-16 Thread I BioKid
Dear All, Currently we are developing an Integrated Web Server with a dedicated cluster to support the server. I need help to set up a web application that can manage the web server and our cluster. For example if the user is submitting a huge set of data to do some processing , the program sh

InterOperate between a cluster and a web server

2007-01-15 Thread I BioKid
Dear All, Currently we are developing an Integrated Web Server with a dedicated cluster to support the server. I need help to set up a web application that can manage the web server and our cluster. For example if the user is submitting a huge set of data to do some processing , the program sh

file parsing program -help

2006-10-17 Thread I BioKid
I need a help to write a tricky perl script I have a file with contents like this (cluster.txt) Cluster 4 0 9606aa, >gi|78706840|ref|N... * Cluster 5 0 9270aa, >gi|24653966|ref|N... * 1 7210aa, >gi|24653978|ref|N... at 99% Cluster 6 0 9196aa, >gi|24660328|ref|N... *

Re: Simple-Yet Trivial Problem - Copy files from directory

2006-08-20 Thread I BioKid
Dear All, Thanks for all your help - I have done it using a mix of the inputs from you guys - Thanks a lot !! -- i biokid

Simple-Yet Trivial Problem - Copy files from directory

2006-08-19 Thread I BioKid
I have a simple - yet trivial problem - I 2000 directory at /home2/foo/foodir/ . I need to copy all files with extension *.atm and *.ali to another directory called temp (say /home2/foo/foodir/temp ) After that I need to run a program in each of this directory - (say joy *.ali ) If am suppose to

Re: File handling using CGI

2006-07-26 Thread I BioKid
Dear Prabu and all, My purpose is simple, I have a web-form, that will accept a file, I need to use this file as an input of a program in my server, then I need to print the out put on the web page. I am able to do the second part, but am not able to get the users file to a variable or array ? I

how to write content of file to an array / variable ?

2006-07-26 Thread I BioKid
One simple question - I need to accept a file from the user and to store it as temp1. then I need to give this file as an input of another program : I wrote a script like this, but it is not working : Help ? #!/usr/bin/perl -w use CGI; my $q = new CGI; my $file = $q->param('file'); print $q->head

its DONE !! CGI Script to pass a file to different servers - code is here

2006-07-26 Thread I BioKid
I made it !!! Thanks to my buddy Arshad - Buddy you're a true-perl-buddy !!! Here comes an easy way, not exactly the way I want it - but I can do it this way too, After all :*There's more than one day to do it in perl*:We used WWW::Mechanize module: A scrap version of the code we used is here :

File handling using CGI

2006-07-26 Thread I BioKid
One simple question - I need to accept a file from the user and to store it as temp1. then I need to give this file as an input of another program : I wrote a script like this, but it is not working : Help ? #!/usr/bin/perl -w use CGI; my $q = new CGI; my $file = $q->param('file'); print $q->head

how to add a list of numbers

2006-07-14 Thread I BioKid
is there any shortest way to add a list of random numbers ? for example : 11 1 250 39 100 , thanks -- ibiokid

Perl Binary to Perl Code

2006-06-30 Thread I BioKid
Dear All, I have a dozen perl and perl-cgi program that converted in to binary files. Is there any code / prggram available to get the source code out of it ? This is my out put when am giving file command $ file alignscr.p alignscr.p: ELF 32-bit LSB executable, Intel 80386, version 1 (SYSV), for

perlcc executable to perl code ?

2006-06-30 Thread I BioKid
Dear All, One quick question: Is ther any way to get the source code out of a perlcc executable ? thanks a bunch to all, ibiokid !!!

perlcc executable to perl code ?

2006-06-30 Thread I BioKid
Dear All, One quick question: Is ther any way to get the source code out of a perlcc executable ? thanks a bunch to all, ibiokid !!!

Re: CGI Script to pass a file to different servers

2006-06-30 Thread I BioKid
Hi all - I woder why am always having some trivial problems to solve ??? I can explain what am lloking for in detail. Say, We have 3 inhouse web servers and 2 remote web servers. All of this web server accept same type of files as input : say foo.txt (these file contain some data and the 5 web se

Perl Binary to Perl Code

2006-06-30 Thread I BioKid
Dear All, I have a dozen perl and perl-cgi program that converted in to binary files. Is there any code / prggram available to get the source code out of it ? This is my out put when am giving file command $ file alignscr.p alignscr.p: ELF 32-bit LSB executable, Intel 80386, version 1 (SYSV), for

CGI Script to pass a file to different servers

2006-06-26 Thread I BioKid
s like you said.I wrote a socket server on another host,then my cgi scripts put the requests to remot socket server,got the results from socket server and print the results to clients' browser. From: "I BioKid" <[EMAIL PROTECTED]> To: beginners@perl.org Subject: CGI Script

CGI Script to pass a file to different servers

2006-06-24 Thread I BioKid
hi all, I need to pass a file from a cgi program to another remote cgipgms and I need to print the out on my web page - how to do it ? any idea ? I posted this query few back - but still I couldnt do it :( --

Any PERL Decompiler / code ?

2006-06-24 Thread I BioKid
Hi All. for my cgi - this is working file test1.cgi test1.cgi: ASCII English text [EMAIL PROTECTED]> strings test1.cgi but still other programs are not showing the text / code this is the message am getting for one of my program file alignscr.p alignscr.p: ELF 32-bit LSB executable, Intel 80

Re: Any PERL Decompiler / code ?

2006-06-23 Thread I BioKid
I am sure it is in perl. I am working on a linux - there is no proper extension for that program for example one program name alscr.p another one is test1.cgi - If u would likt have a closer look - I can send u a file - thanks for the care & support I'm guessing it wasn't written in Perl, then

Re: Any PERL Decompiler / code ?

2006-06-23 Thread I BioKid
Thanks for your reply - Infact I dnt which program was used to generate executable - could you tell me any possible program to get the code out of it ? funny thing is they dnt even have an extension name of .exe for eg a file name alignscr.p - am sure that it is a perl code, but am not able to ope

Re: Any PERL Decompiler / code ?

2006-06-23 Thread I BioKid
Hi I agreed Perl is human readable - for that I should open it in my VI editor - but am not able to at the same time the program is working fine ! This script are not written / made executable / packed byme - am just suppose to use it and at this point of time i need to edit to change some param

Re: Any PERL Decompiler / code ?

2006-06-23 Thread I BioKid
Original Message- From: I BioKid [mailto:[EMAIL PROTECTED] Sent: Friday, June 23, 2006 1:27 PM To: beginners@perl.org Subject: Any PERL Decompiler / code ? hi perlpals, am looking for a decompiler to decode some perl and cgi executable. is there any perl decompilers around (GNU) or raw code wil

Any PERL Decompiler / code ?

2006-06-23 Thread I BioKid
hi perlpals, am looking for a decompiler to decode some perl and cgi executable. is there any perl decompilers around (GNU) or raw code will do ? -- thanks and online pizzas for all help !`

PERL-CGI to pass a file to multiple server

2006-05-29 Thread I BioKid
Hi all, We have three web servers (say a,b,c) that take a similar file (xyz.txt) and gives the results. Now, we want to make a meta-server with three check-boxes and only one input form. The purpose is to accept a single file and run the 'checked' server and provide the results as two separate l

WebServices + XML doublt

2006-03-14 Thread I BioKid
dear all, we have a web server that gives out put of 2 tables and 2 images. now, we want to provide a webservice for this server - with 4 services, for example getfoo_table2 getfoo_table1 getfoo_img1 getfoo_img2 i have to start from the scratch - my doubts - to create a web services, whther we n

WebServices + XML doublt

2006-03-13 Thread I BioKid
dear all, am here again with not a beginners question, but am sure this is one of the most active place to check out perl doubts .. we have a web server that gives out put of 2 tables and 2 images. now, we want to provide a webservice for this server - with 4 services, for example getfoo_table2 g

Matrix Average code / Module Avaialable ?

2006-02-19 Thread I BioKid
Dear All, Is there any program/module to calculate matrix average I have a matrix of NxN and I need to see the average of the same for example 11 22 43 54 50 27 87 74 32 10 66 58 98 78 20 22 23 44 16 34 I have gone through Math::Matrix http://search.cpan.org/~ulpfr/Math-Matrix-0.4/Matrix.pm

Re: text file to xml to database

2006-02-11 Thread I BioKid
query say id no like 6523 or name like foo etc. First we want to transfer this data to xml then we need to put it in a database , Regarding XML - i dont have much idea - we are planning for a PGSQL db Hope you guys care to advice :) S K On 2/11/06, John Doe <[EMAIL PROTECTED]> wrote: > &

text file to xml to database

2006-02-11 Thread I BioKid
hi all, I need technical advice from all perlbuddies, I have 2 text files and I want to convert it to XML and then to a database. It will be really helpfull, if you could give me a proper technical descritption to do it using PERL.like which module should i use, how to parse my text file to xm

text files to xml database

2006-02-11 Thread I BioKid
hi all, I need technical advice from all perlbuddies, I have 2 text files and I want to convert it to XML and then to a database. I need a proper technical descritption to do it using PERL. I need details like which db should i use also. S K -- To unsubscribe, e-mail: [EMAIL PROTECTED] For a

ImageMagick to GD::Graph

2006-02-09 Thread I BioKid
Hi all, I have an Image::Magick code to generate a sample graph simple The program will read a file which contain a list of x-y values and plot it. I am posting this code for those who need to map dynamic code on a static graph, I would appreciate if any of you can convert it for me in to GD::Grap