orking fine.
Cheers,
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On Thu, 25 Feb 2010 19:54:13 +1000, Salvador Fandino
wrote:
On 02/25/2010 07:14 AM, Dave Tang wrote:
Dear list,
I'm trying to use Net::SSH::Perl, but it requires the Math::GMP module.
I have installed a GMP library (required for Math::GMP) but when I try
to install Math::GMP I get an
On Thu, 25 Feb 2010 19:54:13 +1000, Salvador Fandino
wrote:
On 02/25/2010 07:14 AM, Dave Tang wrote:
Dear list,
I'm trying to use Net::SSH::Perl, but it requires the Math::GMP module.
I have installed a GMP library (required for Math::GMP) but when I try
to install Math::GMP I get an
On Thu, 25 Feb 2010 18:30:33 +1000, Octavian Rasnita
wrote:
From: "Dave Tang"
Dear list,
I'm trying to use Net::SSH::Perl, but it requires the Math::GMP module.
I have installed a GMP library (required for Math::GMP) but when I try
to install Math::GMP I get an er
On Thu, 25 Feb 2010 17:27:25 +1000, Shlomi Fish
wrote:
Hi Dave!
Hi Shlomi!
Thank you for your reply.
[snip]
I'm trying to use Net::SSH::Perl, but it requires the Math::GMP module.
I
have installed a GMP library (required for Math::GMP) but when I try to
install Math::GMP I get an error
0 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
Files=6, Tests=0, 0 wallclock secs ( 0.04 usr 0.02 sys + 0.09 cusr
0.03 csys = 0.18 CPU)
Result: FAIL
Failed 1/6 test programs. 0/0 subtests failed.
make: *** [test_dynamic] Error 255
Many thanks,
--
Dave
On Tue, 23 Feb 2010 11:23:23 +1000, Steve Bertrand
wrote:
I belong to several
technical lists, and the de-facto standard is to Reply-All.
Understood and thank you for your answer.
--
Dave Tang
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#x27;s email with my thank you
note.
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On Mon, 08 Feb 2010 22:52:37 +1000, Shawn H Corey
wrote:
Dave Tang wrote:
Hi everybody,
I want to write a script that checks memory usage of my RHEL box, and
ran as a cron job say every 10 minutes.
I could write the Perl script to run a system command like "ps aux",
parse that i
Hi everybody,
I want to write a script that checks memory usage of my RHEL box, and ran
as a cron job say every 10 minutes.
I could write the Perl script to run a system command like "ps aux", parse
that information and kill a job if >90% of the total system memory (and I
realise most of
On Sat, 05 Dec 2009 10:07:34 +1000, Jenda Krynicky
wrote:
what was the name of that law? Something that said that the speed of
computers doubles every ??? years.
Were you referring to this?
http://en.wikipedia.org/wiki/Moore's_law
Dave
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On Sun, 29 Nov 2009 23:39:58 +1000, Huub van Niekerk
wrote:
open my $LPR, '|-', qw/lpr -PDeskJet940C/ or die "can't fork lpr: $!";
$ENV{"PATH"} = "";
at the start of the script, it doesn't seem to complain any more.
Hope that helps,
Thank you, though I'm not out of problems yet. The m
On Sun, 29 Nov 2009 16:30:56 +1000, Huub van Niekerk
wrote:
Hi,
Hello,
I started getting this error after upgrading from Fedora 11 to 12. The
line of code hasn't been changed:
open my $LPR, '|-', qw/lpr -PDeskJet940C/ or die "can't fork lpr: $!";
The error is: "Insecure $ENV{PATH} whil
On Tue, 24 Nov 2009 18:33:30 +1000, Dermot wrote:
2009/11/23 Dave Tang :
On Tue, 24 Nov 2009 09:39:09 +1000, Dermot
wrote:
2009/11/23 Dave Tang :
On Mon, 23 Nov 2009 23:14:51 +1000, Shawn H Corey
Hi Shawn et al.,
I am also intrigued by the \z anchor. I had a look at perldoc
On Mon, 23 Nov 2009 23:14:51 +1000, Shawn H Corey
wrote:
shadow52 wrote:
[snip]
The number is 0111
I was just wanting to get the last 3 digits from this number to be
able to get an exact word phrase from my already loaded Hash table
that I have created for various numbers tha
On Tue, 17 Nov 2009 19:20:42 +1000, Thomas Bätzler
wrote:
Hi,
Jeff Pang wrote:
On Nov 17, 2009, Dave Tang wrote:
> Is it possible to implement an incremental find* feature on a Perl CGI
> page? I'm running Apache2 with mod_perl on linux.
>
> For example, if I have a lis
Hi everybody,
Is it possible to implement an incremental find* feature on a Perl CGI
page? I'm running Apache2 with mod_perl on linux.
For example, if I have a list of stuff (A, Aa, B, Bb, C, CA, etc. stored
in a file or database) and when a user starts typing in A into the web
form, 2 su
On Tue, 03 Nov 2009 17:48:55 +1000, Thomas Bätzler
wrote:
Dave Tang asked:
Just a quick question, how does Perl interpret something like
$array[0.7995038473872]?
Just like $array[ int(0.7995038473872) ], i.e. the floating point number
is coerced into an integer value by cutting off the
On Tue, 03 Nov 2009 17:23:38 +1000, Thomas Bätzler
wrote:
Majian asked:
[...]
print "Array of random: $array[rand @array]\n";
I thoght it might work but it doesnt. I hope someone could give me an
idea to work this out...
TIMTOWTDY:
a) print "Array of random: $array[rand( @array ) ] \n
On Sat, 10 Oct 2009 00:07:01 +1000, Jyoti wrote:
Hello All,
I am able to connect to postgreSQL database via my server. I used PHP to
connect .. now i wanna know how to create databases via php and access
queries so that i get the results on my server.
I have to make php scripts. But where shou
On Wed, 07 Oct 2009 17:38:59 +1000, Raymond Wan wrote:
Did you consider Dave's suggestion about using netblast (which I
honestly have never used)?
Ah I shouldn't have gotten it wrong in the first place, but its wwwblast.
Basically just download the wwwblast-arch-os.tar.gz (so if you're on
On Tue, 06 Oct 2009 21:34:04 +1000, Jyoti wrote:
Thanks for your help Dave.
Not a problem Jyo.
Yes that was Javascript.. Just as m a beginner, I thot we can convert
javascipts to cgi scripts.!!! Am I wrong?
You can use Perl to write a cgi script that outputs JavaScript code. You
can't u
On Tue, 06 Oct 2009 11:57:53 +1000, Jyoti wrote:
Hello All,
Can anyone please help with one small error I am getting for line 16( The
one which is bold n italic below.)
The error is : Can't call method "str" on an undefined value at
firstpage.pl
line 16.
Just a warning, I am also a beginn
On Tue, 06 Oct 2009 13:33:27 +1000, Dave Tang wrote:
On Tue, 06 Oct 2009 12:11:47 +1000, Jyoti wrote:
Hello,
Hello Jyoti,
Can anyone help me to know how to make a script which can take any
sequences
by user as user input and give blast results as user output. This should
work in a
want to explain your problem in more general terms and
elaborate.
Thanks in Advance.
Kind Regards,
Jyo
Hope that helps,
--
Dave Tang
Research Assistant
Institute for Molecular Biosciences
http://www.imb.uq.edu.au/
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For additional
;^H###7m<88><92>r]
[###7m<88><92>^H###7m<88><92>ddes###24m<80><90>^H###<80><90>
tination_file] [###7m<88><92>^H###7m<88><92>oformatname]
[###7m<88><92>^H###7m<88><92>MFo
rmatter
On Thu, 03 Sep 2009 13:18:44 +1000, Uri Guttman
wrote:
"TB" == Tim Bowden writes:
TB> On Thu, 2009-09-03 at 11:39 +1000, Dave Tang wrote:
>> I wanted to ask why is Perl, in comparison to other programming
>> languages, so powerful in text pro
Hi everybody,
I constantly read about Perl's powerful regular expression matching and
string manipulation operators, and how it is superior to other programming
languages in this aspect.
Furthermore, I read this in the wikipedia entry of Perl:
"The language provides powerful text processin
On Wed, 26 Aug 2009 16:41:39 +1000, Chas. Owens
wrote:
On Wed, Aug 26, 2009 at 02:23, Dave Tang wrote:
Dear list,
I am trying to import entries in a csv file into a relational database,
however there are entries such as:
a,b,c,d,e,"f1,f2","g1,g2" which spoil my split
Dear list,
I am trying to import entries in a csv file into a relational database,
however there are entries such as:
a,b,c,d,e,"f1,f2","g1,g2" which spoil my split(/,/).
The quotes group f1 and f2 as a single entry. I know each each database
entry should be atomic, but I'll deal with that
On Wed, 05 Aug 2009 12:55:22 +1000, Chas. Owens
wrote:
snip
In this case it is telling Perl that compare expects two scalars as
arguments.
snip
Now the compare($$) makes much more sense.
snip
There are many [pitfalls][2] to prototypes and they should really not be
used unless you have a
Hi everybody,
I was reading perlfaq7.pod, 7.15: How can I pass/return a {Function,
FileHandle, Array, Hash, Method, Regex}?
In one of the examples it shows how regular expressions can be passed to
subroutines:
sub compare($$) {
my ($val1, $regex) = @_;
Hi everybody,
I am having a problem with binding a variable when executing on a DBI
object. The code goes:
#!/usr/bin/perl
use warnings;
use strict;
use DBI;
#DBI variables
my $database = 'databaseName';
my $hostname = 'localhost';
my $dsn = "DBI:mysql:database=$database;host=$hostname";
my
On Tue, 07 Jul 2009 08:19:50 +1000, Emanuele Osimo
wrote:
Hello there,
I'm a biologist and I'm trying to start using bioperl for bioinformatic
purposese but I've never programmed.
Could you suggest me something to read to start from 0 level?
Have you looked at Beginning Perl for Bioinformat
Hello,
I've been going through perldoc perlboot and I have a question about using
the SUPER class. Here's the code in the documentation:
#!/usr/bin/perl
use strict;
use warnings;
{
package Animal;
sub speak {
my $class = shift;
print "a $class goes ", $class->sound, "!\n";
Hello,
I have a problem, which I have put into an analogy.
Suppose a parent has 11 children. These children like chocolate. If 9 or
more of the 11 children from the same parent like a particular chocolate,
the parent will like the chocolate. I want to find out what types of
chocolate each
On Tue, 09 Jun 2009 16:16:41 +1000, Irfan Sayed
wrote:
Hi ALL,
i have written sample cgi script in perl. here it is
#!/usr/bin/perl
print "Content-type: text/html\n\n";
print <
Welcome to CGI scripting
HI
Try putting the HI at the start of the line.
but when i a
On Tue, 31 Mar 2009 04:49:17 +1000, John W. Krahn wrote:
Or instead of using arrays you could store the 1s and 0s in strings:
$ perl -le'
my $string = "10110111001";
print $-[0] while $string =~ /0/g;
'
1
4
8
9
Hi John,
Could you explain how the above code works please? I looked up perl -l
On Thu, 30 Oct 2008 16:04:31 +1000, Dave Tang <[EMAIL PROTECTED]> wrote:
Hi everybody,
I am working with a sorted array (sorted from smallest to largest),
containing coordinates as such:
13645692
13645693
13645694
13645695
13645696
13645697
13645698
13645699
13645700
13645701
13
Hi everybody,
I am working with a sorted array (sorted from smallest to largest),
containing coordinates as such:
13645692
13645693
13645694
13645695
13645696
13645697
13645698
13645699
13645700
13645701
13645702
13645703
13645704
13645705
13645706
13645707
13645708
13645709
13645710
13645711
Hello,
Use bioperl (http://www.bioperl.org/wiki/Main_Page) for this task.
This should do what you want:
#!/usr/bin/perl
use strict;
use warnings;
use Bio::SeqIO;
my $fastaFile = 'myfile';
my $pattern = 'CTTGGCGAGAAGGGCCGCTACCTGCTGGCCGCCTCCTTCGGCAACGT';
my $blockThreshold = '500';
my $numFasta
Try moving $utadm_1 up a few lines, before calling the subroutine.
#!/usr/bin/perl -w
$utadm_l = "/opt/SUNWut/sbin/utadm -l" ;
check_LANon () ;
sub check_LANon {
$LANstat = system(" $utadm_l | grep On") ;
print "$LANstat\n" ;
}
Dave
On Tue, 21 Oct 2008 03:06:34 +1000, Ariel C
Try taking away the "+" in your filehandle line, so that it reads:
open
(WRITE,">/Users/dave/Documents/Programming/Perl/081008mathables/add.txt");
Dave
On Fri, 10 Oct 2008 09:31:02 +1000, David <[EMAIL PROTECTED]> wrote:
open(WRITE,"+>/Users/dave/Documents/Programming/Perl/081008mathtables
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