Re: [OMPI users] Passwordless ssh
Hi You also must make sure that all slaves can connect via ssh to each other and to the master node without ssh. Jody On Wed, Dec 21, 2011 at 3:57 AM, Shaandar Nyamtulga wrote: > Can you clarify your answer please. > I have one master node and other slave nodes. I created rsa key on my master > node and copied it to all slaves. > /home/mpiuser directory of all nodes are shared through NFS.The strange > thing is why it requires password after I mount a slave and do ssh to the > slave. > When I dismount I can ssh without password. > > > > Date: Tue, 20 Dec 2011 10:45:12 +0100 > From: mathieu.westp...@obs.ujf-grenoble.fr > To: us...@open-mpi.org > Subject: Re: [OMPI users] Passwordless ssh > > > Hello > > You have to copy nodeX public key at the end of nodeY authorizedkeys. > > > Mathieu > Le 20/12/2011 05:03, Shaandar Nyamtulga a écrit : > > Hi > I built Beuwolf cluster using OpenMPI reading the following link. > http://techtinkering.com/2009/12/02/setting-up-a-beowulf-cluster-using-open-mpi-on-linux/ > I can access my nodes without password before mounting my slaves. > But when I mount my slaves and run a program, it asks again passwords. > > $ eval `ssh-agent` > > $ ssh-add ~/.ssh/id_dsa > > The above is not working. Terminal gives the reply "Could not open a > connection to your authentication agent." > > Help is needed urgently. > > Thank you > > > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > ___ users mailing list > us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
[OMPI users] Strange Execution block each second
Hello I've coded an mpi programm who run on 9 process. 7 process are in one node, 2 other on another node. It works really good, but sometimes it's kind like the 8th process block for 10ms. Here is the scheme of the error Normal execution 1000 ms | 10ms BLOCK | 60 ms execution | 10 ms BLOCK | 1000 ms execution and so on. It's always the 8th process who block the programm. Do someone experience any similar behavior? Thanks Mathieu Westphal
[OMPI users] Clean install fails
I've just completed installing OpenSuSE 12.1 on a standalone node. Using the bundled GCC and OpenMPI the user code fails. I've reduced the problem to that below, but without the source I'm not sure what orte_init is after. Using mpirun -np 1 or -np 2 both fail in the same way. Any suggestions? $ cat test.f END $ gfortran -o test-f test.f $ ./test-f $ echo $? 0 $ mpirun ./test-f [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file runtime/orte_init.c at line 125 -- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): orte_ess_base_select failed --> Returned value Not found (-13) instead of ORTE_SUCCESS -- [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file orterun.c at line 543 $ Martin Rushton HPC System Manager, Weapons Technologies Tel: 01959 514777, Mobile: 07939 219057 email: jmrush...@qinetiq.com www.QinetiQ.com QinetiQ - Delivering customer-focused solutions Please consider the environment before printing this email. This email and any attachments to it may be confidential and are intended solely for the use of the individual to whom it is addressed. If you are not the intended recipient of this email, you must neither take any action based upon its contents, nor copy or show it to anyone. Please contact the sender if you believe you have received this email in error. QinetiQ may monitor email traffic data and also the content of email for the purposes of security. QinetiQ Limited (Registered in England & Wales: Company Number: 3796233) Registered office: Cody Technology Park, Ively Road, Farnborough, Hampshire, GU14 0LX http://www.qinetiq.com.
Re: [OMPI users] Clean install fails
Your OMPI install looks busted. Can you send all the info listed in the "support" section on the OMPI web site? Sent from my phone. No type good. On Dec 21, 2011, at 7:37 AM, "Rushton Martin" wrote: > I've just completed installing OpenSuSE 12.1 on a standalone node. > Using the bundled GCC and OpenMPI the user code fails. I've reduced the > problem to that below, but without the source I'm not sure what > orte_init is after. Using mpirun -np 1 or -np 2 both fail in the same > way. Any suggestions? > > $ cat test.f >END > $ gfortran -o test-f test.f > $ ./test-f > $ echo $? > 0 > $ mpirun ./test-f > [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file > runtime/orte_init.c at line 125 > > -- > It looks like orte_init failed for some reason; your parallel process is > likely to abort. There are many reasons that a parallel process can > fail during orte_init; some of which are due to configuration or > environment problems. This failure appears to be an internal failure; > here's some additional information (which may only be relevant to an > Open MPI developer): > > orte_ess_base_select failed > --> Returned value Not found (-13) instead of ORTE_SUCCESS > > -- > [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file > orterun.c at line 543 > $ > > > Martin Rushton > HPC System Manager, Weapons Technologies > Tel: 01959 514777, Mobile: 07939 219057 > email: jmrush...@qinetiq.com > www.QinetiQ.com > QinetiQ - Delivering customer-focused solutions > > Please consider the environment before printing this email. > This email and any attachments to it may be confidential and are > intended solely for the use of the individual to whom it is > addressed. If you are not the intended recipient of this email, > you must neither take any action based upon its contents, nor > copy or show it to anyone. Please contact the sender if you > believe you have received this email in error. QinetiQ may > monitor email traffic data and also the content of email for > the purposes of security. QinetiQ Limited (Registered in England > & Wales: Company Number: 3796233) Registered office: Cody Technology > Park, Ively Road, Farnborough, Hampshire, GU14 0LX http://www.qinetiq.com. > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] UC Clean install fails
For run-time problems: 1.Check the FAQ first. DONE. nothing obvious. 2.The version of Open MPI that you're using.openmpi-1.4.3 3.The config.log file Installed as binary 4.The output of the "ompi_info --all" See enclosed gzip 5.If running on more than one node Not applicable 6.A detailed description of what is failing.See original posting PATH /usr/lib64/mpi/gcc/openmpi/bin:\ ...:\ /usr/local/bin:\ /usr/bin:\ /bin:/usr/bin/X11:\ /usr/X11R6/bin:\ /usr/games:\ /usr/lib64/jvm/jre/bin LD_LIBRARY_PATH /usr/lib64/mpi/gcc/openmpi/lib64 7.Network Not applicable I hope this is the correct information you require. Martin Rushton HPC System Manager, Weapons Technologies Tel: 01959 514777, Mobile: 07939 219057 email: jmrush...@qinetiq.com www.QinetiQ.com QinetiQ - Delivering customer-focused solutions Please consider the environment before printing this email. -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Jeff Squyres (jsquyres) Sent: 21 December 2011 12:51 To: Open MPI Users Cc: Open MPI Users Subject: Re: [OMPI users] Clean install fails Your OMPI install looks busted. Can you send all the info listed in the "support" section on the OMPI web site? Sent from my phone. No type good. On Dec 21, 2011, at 7:37 AM, "Rushton Martin" wrote: > I've just completed installing OpenSuSE 12.1 on a standalone node. > Using the bundled GCC and OpenMPI the user code fails. I've reduced > the problem to that below, but without the source I'm not sure what > orte_init is after. Using mpirun -np 1 or -np 2 both fail in the same > way. Any suggestions? > > $ cat test.f >END > $ gfortran -o test-f test.f > $ ./test-f > $ echo $? > 0 > $ mpirun ./test-f > [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file > runtime/orte_init.c at line 125 > -- > -- > -- > It looks like orte_init failed for some reason; your parallel process > is likely to abort. There are many reasons that a parallel process > can fail during orte_init; some of which are due to configuration or > environment problems. This failure appears to be an internal failure; > here's some additional information (which may only be relevant to an > Open MPI developer): > > orte_ess_base_select failed > --> Returned value Not found (-13) instead of ORTE_SUCCESS > -- > -- > -- > [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file > orterun.c at line 543 $ > > > Martin Rushton > HPC System Manager, Weapons Technologies > Tel: 01959 514777, Mobile: 07939 219057 > email: jmrush...@qinetiq.com > www.QinetiQ.com > QinetiQ - Delivering customer-focused solutions > > Please consider the environment before printing this email. > This email and any attachments to it may be confidential and are > intended solely for the use of the individual to whom it is addressed. > If you are not the intended recipient of this email, you must neither > take any action based upon its contents, nor copy or show it to > anyone. Please contact the sender if you believe you have received > this email in error. QinetiQ may monitor email traffic data and also > the content of email for the purposes of security. QinetiQ Limited > (Registered in England & Wales: Company Number: 3796233) Registered > office: Cody Technology Park, Ively Road, Farnborough, Hampshire, GU14 > 0LX http://www.qinetiq.com. > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users ___ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users The QinetiQ e-mail privacy policy and company information is detailed elsewhere in the body of this email. ompi_info--all.gz Description: ompi_info--all.gz
Re: [OMPI users] UC Clean install fails
How strange - it looks like you are missing a bunch of libraries. What do you get if you do ls -R /usr/lib64/mpi/gcc/openmpi/lib64 On Dec 21, 2011, at 6:26 AM, Rushton Martin wrote: > For run-time problems: > > 1.Check the FAQ first.DONE. nothing obvious. > 2.The version of Open MPI that you're using. openmpi-1.4.3 > 3.The config.log file Installed as binary > 4.The output of the "ompi_info --all" See enclosed gzip > 5.If running on more than one nodeNot applicable > 6.A detailed description of what is failing. See original posting > PATH > /usr/lib64/mpi/gcc/openmpi/bin:\ > ...:\ > /usr/local/bin:\ > /usr/bin:\ > /bin:/usr/bin/X11:\ > /usr/X11R6/bin:\ > /usr/games:\ > /usr/lib64/jvm/jre/bin > LD_LIBRARY_PATH > /usr/lib64/mpi/gcc/openmpi/lib64 > 7.Network Not applicable > > I hope this is the correct information you require. > > Martin Rushton > HPC System Manager, Weapons Technologies > Tel: 01959 514777, Mobile: 07939 219057 > email: jmrush...@qinetiq.com > www.QinetiQ.com > QinetiQ - Delivering customer-focused solutions > > Please consider the environment before printing this email. > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeff Squyres (jsquyres) > Sent: 21 December 2011 12:51 > To: Open MPI Users > Cc: Open MPI Users > Subject: Re: [OMPI users] Clean install fails > > Your OMPI install looks busted. Can you send all the info listed in the > "support" section on the OMPI web site? > > Sent from my phone. No type good. > > On Dec 21, 2011, at 7:37 AM, "Rushton Martin" > wrote: > >> I've just completed installing OpenSuSE 12.1 on a standalone node. >> Using the bundled GCC and OpenMPI the user code fails. I've reduced >> the problem to that below, but without the source I'm not sure what >> orte_init is after. Using mpirun -np 1 or -np 2 both fail in the same > >> way. Any suggestions? >> >> $ cat test.f >> END >> $ gfortran -o test-f test.f >> $ ./test-f >> $ echo $? >> 0 >> $ mpirun ./test-f >> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >> runtime/orte_init.c at line 125 >> -- >> -- >> -- >> It looks like orte_init failed for some reason; your parallel process >> is likely to abort. There are many reasons that a parallel process >> can fail during orte_init; some of which are due to configuration or >> environment problems. This failure appears to be an internal failure; > >> here's some additional information (which may only be relevant to an >> Open MPI developer): >> >> orte_ess_base_select failed >> --> Returned value Not found (-13) instead of ORTE_SUCCESS >> -- >> -- >> -- >> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >> orterun.c at line 543 $ >> >> >> Martin Rushton >> HPC System Manager, Weapons Technologies >> Tel: 01959 514777, Mobile: 07939 219057 >> email: jmrush...@qinetiq.com >> www.QinetiQ.com >> QinetiQ - Delivering customer-focused solutions >> >> Please consider the environment before printing this email. >> This email and any attachments to it may be confidential and are >> intended solely for the use of the individual to whom it is addressed. > >> If you are not the intended recipient of this email, you must neither >> take any action based upon its contents, nor copy or show it to >> anyone. Please contact the sender if you believe you have received >> this email in error. QinetiQ may monitor email traffic data and also >> the content of email for the purposes of security. QinetiQ Limited >> (Registered in England & Wales: Company Number: 3796233) Registered >> office: Cody Technology Park, Ively Road, Farnborough, Hampshire, GU14 > >> 0LX http://www.qinetiq.com. >> >> ___ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > The QinetiQ e-mail privacy policy and company information is detailed > elsewhere in the body of this email. > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] UC Clean install fails
I agree it looks like it, but YaST ought to be able to work out dependencies. Anyhow, here is the listing: isis:/usr/lib64/mpi/gcc/openmpi # ls -R lib64 lib64: libmca_common_sm.so.1 libmpi_f77.so.0 libopen-rte.so.0 libmca_common_sm.so.1.0.0 libmpi_f77.so.0.0.1 libopen-rte.so.0.0.0 libmpi.so.0libmpi_f90.so.0 libopenmpi_malloc.so.0 libmpi.so.0.0.2libmpi_f90.so.0.0.1 libopenmpi_malloc.so.0.0.0 libmpi_cxx.so.0libopen-pal.so.0 mpi.mod libmpi_cxx.so.0.0.1libopen-pal.so.0.0.0 isis:/usr/lib64/mpi/gcc/openmpi # Thanks all, Martin Rushton HPC System Manager, Weapons Technologies Tel: 01959 514777, Mobile: 07939 219057 email: jmrush...@qinetiq.com www.QinetiQ.com QinetiQ - Delivering customer-focused solutions Please consider the environment before printing this email. -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Ralph Castain Sent: 21 December 2011 15:03 To: Open MPI Users Subject: Re: [OMPI users] UC Clean install fails How strange - it looks like you are missing a bunch of libraries. What do you get if you do ls -R /usr/lib64/mpi/gcc/openmpi/lib64 On Dec 21, 2011, at 6:26 AM, Rushton Martin wrote: > For run-time problems: > > 1.Check the FAQ first.DONE. nothing obvious. > 2.The version of Open MPI that you're using. openmpi-1.4.3 > 3.The config.log file Installed as binary > 4.The output of the "ompi_info --all" See enclosed gzip > 5.If running on more than one nodeNot applicable > 6.A detailed description of what is failing. See original posting > PATH > /usr/lib64/mpi/gcc/openmpi/bin:\ > ...:\ > /usr/local/bin:\ > /usr/bin:\ > /bin:/usr/bin/X11:\ > /usr/X11R6/bin:\ > /usr/games:\ > /usr/lib64/jvm/jre/bin > LD_LIBRARY_PATH > /usr/lib64/mpi/gcc/openmpi/lib64 > 7.Network Not applicable > > I hope this is the correct information you require. > > Martin Rushton > HPC System Manager, Weapons Technologies > Tel: 01959 514777, Mobile: 07939 219057 > email: jmrush...@qinetiq.com > www.QinetiQ.com > QinetiQ - Delivering customer-focused solutions > > Please consider the environment before printing this email. > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On Behalf Of Jeff Squyres (jsquyres) > Sent: 21 December 2011 12:51 > To: Open MPI Users > Cc: Open MPI Users > Subject: Re: [OMPI users] Clean install fails > > Your OMPI install looks busted. Can you send all the info listed in > the "support" section on the OMPI web site? > > Sent from my phone. No type good. > > On Dec 21, 2011, at 7:37 AM, "Rushton Martin" > wrote: > >> I've just completed installing OpenSuSE 12.1 on a standalone node. >> Using the bundled GCC and OpenMPI the user code fails. I've reduced >> the problem to that below, but without the source I'm not sure what >> orte_init is after. Using mpirun -np 1 or -np 2 both fail in the >> same > >> way. Any suggestions? >> >> $ cat test.f >> END >> $ gfortran -o test-f test.f >> $ ./test-f >> $ echo $? >> 0 >> $ mpirun ./test-f >> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >> runtime/orte_init.c at line 125 >> - >> - >> -- >> -- >> It looks like orte_init failed for some reason; your parallel process >> is likely to abort. There are many reasons that a parallel process >> can fail during orte_init; some of which are due to configuration or >> environment problems. This failure appears to be an internal >> failure; > >> here's some additional information (which may only be relevant to an >> Open MPI developer): >> >> orte_ess_base_select failed >> --> Returned value Not found (-13) instead of ORTE_SUCCESS >> - >> - >> -- >> -- >> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >> orterun.c at line 543 $ >> >> >> Martin Rushton >> HPC System Manager, Weapons Technologies >> Tel: 01959 514777, Mobile: 07939 219057 >> email: jmrush...@qinetiq.com >> www.QinetiQ.com >> QinetiQ - Delivering customer-focused solutions This email and any attachments to it may be confidential and are intended solely for the use of the individual to whom it is addressed. If you are not the intended recipient of this email, you must neither take any action based upon its contents, nor copy or show it to anyone. Please contact the sender if you believe you have received this email
Re: [OMPI users] UC Clean install fails
Yeah, you are missing all the component libraries - there should be a couple of subdirectories under there. I would suggest either reinstalling or grabbing a tarball and installing by hand. On Dec 21, 2011, at 8:13 AM, Rushton Martin wrote: > I agree it looks like it, but YaST ought to be able to work out > dependencies. Anyhow, here is the listing: > > isis:/usr/lib64/mpi/gcc/openmpi # ls -R lib64 > lib64: > libmca_common_sm.so.1 libmpi_f77.so.0 libopen-rte.so.0 > libmca_common_sm.so.1.0.0 libmpi_f77.so.0.0.1 libopen-rte.so.0.0.0 > libmpi.so.0libmpi_f90.so.0 libopenmpi_malloc.so.0 > libmpi.so.0.0.2libmpi_f90.so.0.0.1 > libopenmpi_malloc.so.0.0.0 > libmpi_cxx.so.0libopen-pal.so.0 mpi.mod > libmpi_cxx.so.0.0.1libopen-pal.so.0.0.0 > isis:/usr/lib64/mpi/gcc/openmpi # > > Thanks all, > > Martin Rushton > HPC System Manager, Weapons Technologies > Tel: 01959 514777, Mobile: 07939 219057 > email: jmrush...@qinetiq.com > www.QinetiQ.com > QinetiQ - Delivering customer-focused solutions > > Please consider the environment before printing this email. > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Ralph Castain > Sent: 21 December 2011 15:03 > To: Open MPI Users > Subject: Re: [OMPI users] UC Clean install fails > > How strange - it looks like you are missing a bunch of libraries. What > do you get if you do > > ls -R /usr/lib64/mpi/gcc/openmpi/lib64 > > > On Dec 21, 2011, at 6:26 AM, Rushton Martin wrote: > >> For run-time problems: >> >> 1.Check the FAQ first. DONE. nothing > obvious. >> 2.The version of Open MPI that you're using. openmpi-1.4.3 >> 3.The config.log fileInstalled as binary >> 4.The output of the "ompi_info --all"See enclosed gzip >> 5.If running on more than one node Not applicable >> 6.A detailed description of what is failing. See original posting >> PATH >> /usr/lib64/mpi/gcc/openmpi/bin:\ >> ...:\ >> /usr/local/bin:\ >> /usr/bin:\ >> /bin:/usr/bin/X11:\ >> /usr/X11R6/bin:\ >> /usr/games:\ >> /usr/lib64/jvm/jre/bin >> LD_LIBRARY_PATH >> /usr/lib64/mpi/gcc/openmpi/lib64 >> 7.NetworkNot applicable >> >> I hope this is the correct information you require. >> >> Martin Rushton >> HPC System Manager, Weapons Technologies >> Tel: 01959 514777, Mobile: 07939 219057 >> email: jmrush...@qinetiq.com >> www.QinetiQ.com >> QinetiQ - Delivering customer-focused solutions >> >> Please consider the environment before printing this email. >> -Original Message- >> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] >> On Behalf Of Jeff Squyres (jsquyres) >> Sent: 21 December 2011 12:51 >> To: Open MPI Users >> Cc: Open MPI Users >> Subject: Re: [OMPI users] Clean install fails >> >> Your OMPI install looks busted. Can you send all the info listed in >> the "support" section on the OMPI web site? >> >> Sent from my phone. No type good. >> >> On Dec 21, 2011, at 7:37 AM, "Rushton Martin" >> wrote: >> >>> I've just completed installing OpenSuSE 12.1 on a standalone node. >>> Using the bundled GCC and OpenMPI the user code fails. I've reduced >>> the problem to that below, but without the source I'm not sure what >>> orte_init is after. Using mpirun -np 1 or -np 2 both fail in the >>> same >> >>> way. Any suggestions? >>> >>> $ cat test.f >>> END >>> $ gfortran -o test-f test.f >>> $ ./test-f >>> $ echo $? >>> 0 >>> $ mpirun ./test-f >>> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >>> runtime/orte_init.c at line 125 >>> - >>> - >>> -- >>> -- >>> It looks like orte_init failed for some reason; your parallel process > >>> is likely to abort. There are many reasons that a parallel process >>> can fail during orte_init; some of which are due to configuration or >>> environment problems. This failure appears to be an internal >>> failure; >> >>> here's some additional information (which may only be relevant to an >>> Open MPI developer): >>> >>> orte_ess_base_select failed >>> --> Returned value Not found (-13) instead of ORTE_SUCCESS >>> - >>> - >>> -- >>> -- >>> [isis:02474] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file >>> orterun.c at line 543 $ >>> >>> >>> Martin Rushton >>> HPC System Manager, Weapons Technologies >>> Tel: 01959 514777, Mobile: 07939 219057 >>> email: jmrush...@qinetiq.com >>>
Re: [OMPI users] UC UC Clean install fails
OK, this is starting to look like a SuSE problem I've downgraded the 1.4.3 version to 1.2.8 from SuSE 11.4. There are no subdirectories under .../openmpi/lib64. I checked the file list in YaST, but that may be reflecting the disk rather than the RPM. I ripped all of OpenMPI out and reinstalled afresh from 11.4, still no subdirectories, and the file list doesn't show anything up. I've got an old 1.3 RPM available, so I'll try building from that. Failing all else I'll try downloading the latest tarball from OpenMPI directly tomorrow. Martin Rushton HPC System Manager, Weapons Technologies Tel: 01959 514777, Mobile: 07939 219057 email: jmrush...@qinetiq.com www.QinetiQ.com QinetiQ - Delivering customer-focused solutions Please consider the environment before printing this email. -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Ralph Castain Sent: 21 December 2011 15:18 To: Open MPI Users Subject: Re: [OMPI users] UC Clean install fails Yeah, you are missing all the component libraries - there should be a couple of subdirectories under there. I would suggest either reinstalling or grabbing a tarball and installing by hand. On Dec 21, 2011, at 8:13 AM, Rushton Martin wrote: > I agree it looks like it, but YaST ought to be able to work out > dependencies. Anyhow, here is the listing: > > isis:/usr/lib64/mpi/gcc/openmpi # ls -R lib64 > lib64: > libmca_common_sm.so.1 libmpi_f77.so.0 libopen-rte.so.0 > libmca_common_sm.so.1.0.0 libmpi_f77.so.0.0.1 libopen-rte.so.0.0.0 > libmpi.so.0libmpi_f90.so.0 libopenmpi_malloc.so.0 > libmpi.so.0.0.2libmpi_f90.so.0.0.1 > libopenmpi_malloc.so.0.0.0 > libmpi_cxx.so.0libopen-pal.so.0 mpi.mod > libmpi_cxx.so.0.0.1libopen-pal.so.0.0.0 > isis:/usr/lib64/mpi/gcc/openmpi # > > Thanks all, > > Martin Rushton This email and any attachments to it may be confidential and are intended solely for the use of the individual to whom it is addressed. If you are not the intended recipient of this email, you must neither take any action based upon its contents, nor copy or show it to anyone. Please contact the sender if you believe you have received this email in error. QinetiQ may monitor email traffic data and also the content of email for the purposes of security. QinetiQ Limited (Registered in England & Wales: Company Number: 3796233) Registered office: Cody Technology Park, Ively Road, Farnborough, Hampshire, GU14 0LX http://www.qinetiq.com.
Re: [OMPI users] UC UC Clean install fails
We don't really have any contacts at SUSE. Can you query to fid out who te upstream provider is and send them a note that their OMPI package is broken? Sent from my phone. No type good. On Dec 21, 2011, at 11:15 AM, "Rushton Martin" wrote: > OK, this is starting to look like a SuSE problem I've downgraded the > 1.4.3 version to 1.2.8 from SuSE 11.4. There are no subdirectories > under .../openmpi/lib64. I checked the file list in YaST, but that may > be reflecting the disk rather than the RPM. > > I ripped all of OpenMPI out and reinstalled afresh from 11.4, still no > subdirectories, and the file list doesn't show anything up. I've got an > old 1.3 RPM available, so I'll try building from that. Failing all else > I'll try downloading the latest tarball from OpenMPI directly tomorrow. > > > Martin Rushton > HPC System Manager, Weapons Technologies > Tel: 01959 514777, Mobile: 07939 219057 > email: jmrush...@qinetiq.com > www.QinetiQ.com > QinetiQ - Delivering customer-focused solutions > > Please consider the environment before printing this email. > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Ralph Castain > Sent: 21 December 2011 15:18 > To: Open MPI Users > Subject: Re: [OMPI users] UC Clean install fails > > Yeah, you are missing all the component libraries - there should be a > couple of subdirectories under there. I would suggest either > reinstalling or grabbing a tarball and installing by hand. > > > On Dec 21, 2011, at 8:13 AM, Rushton Martin wrote: > >> I agree it looks like it, but YaST ought to be able to work out >> dependencies. Anyhow, here is the listing: >> >> isis:/usr/lib64/mpi/gcc/openmpi # ls -R lib64 >> lib64: >> libmca_common_sm.so.1 libmpi_f77.so.0 libopen-rte.so.0 >> libmca_common_sm.so.1.0.0 libmpi_f77.so.0.0.1 libopen-rte.so.0.0.0 >> libmpi.so.0libmpi_f90.so.0 > libopenmpi_malloc.so.0 >> libmpi.so.0.0.2libmpi_f90.so.0.0.1 >> libopenmpi_malloc.so.0.0.0 >> libmpi_cxx.so.0libopen-pal.so.0 mpi.mod >> libmpi_cxx.so.0.0.1libopen-pal.so.0.0.0 >> isis:/usr/lib64/mpi/gcc/openmpi # >> >> Thanks all, >> >> Martin Rushton > This email and any attachments to it may be confidential and are > intended solely for the use of the individual to whom it is > addressed. If you are not the intended recipient of this email, > you must neither take any action based upon its contents, nor > copy or show it to anyone. Please contact the sender if you > believe you have received this email in error. QinetiQ may > monitor email traffic data and also the content of email for > the purposes of security. QinetiQ Limited (Registered in England > & Wales: Company Number: 3796233) Registered office: Cody Technology > Park, Ively Road, Farnborough, Hampshire, GU14 0LX http://www.qinetiq.com. > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] UC UC UC Clean install fails
I'll feed back to them tomorrow. The 1.3 OpenMPI tarball configured and made OK. The "noddy" test case runs, I'll see what the users say later. Thanks all for you assistance. Martin Rushton HPC System Manager, Weapons Technologies Tel: 01959 514777, Mobile: 07939 219057 email: jmrush...@qinetiq.com www.QinetiQ.com QinetiQ - Delivering customer-focused solutions Please consider the environment before printing this email. -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Jeff Squyres (jsquyres) Sent: 21 December 2011 16:37 To: Open MPI Users Subject: Re: [OMPI users] UC UC Clean install fails We don't really have any contacts at SUSE. Can you query to fid out who te upstream provider is and send them a note that their OMPI package is broken? Sent from my phone. No type good. On Dec 21, 2011, at 11:15 AM, "Rushton Martin" wrote: > OK, this is starting to look like a SuSE problem I've downgraded the > 1.4.3 version to 1.2.8 from SuSE 11.4. There are no subdirectories > under .../openmpi/lib64. I checked the file list in YaST, but that > may be reflecting the disk rather than the RPM. > > I ripped all of OpenMPI out and reinstalled afresh from 11.4, still no > subdirectories, and the file list doesn't show anything up. I've got > an old 1.3 RPM available, so I'll try building from that. Failing all > else I'll try downloading the latest tarball from OpenMPI directly tomorrow. > > > Martin Rushton > HPC System Manager, Weapons Technologies > Tel: 01959 514777, Mobile: 07939 219057 > email: jmrush...@qinetiq.com > www.QinetiQ.com > QinetiQ - Delivering customer-focused solutions > > Please consider the environment before printing this email. > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] > On Behalf Of Ralph Castain > Sent: 21 December 2011 15:18 > To: Open MPI Users > Subject: Re: [OMPI users] UC Clean install fails > > Yeah, you are missing all the component libraries - there should be a > couple of subdirectories under there. I would suggest either > reinstalling or grabbing a tarball and installing by hand. > > > On Dec 21, 2011, at 8:13 AM, Rushton Martin wrote: > >> I agree it looks like it, but YaST ought to be able to work out >> dependencies. Anyhow, here is the listing: >> >> isis:/usr/lib64/mpi/gcc/openmpi # ls -R lib64 >> lib64: >> libmca_common_sm.so.1 libmpi_f77.so.0 libopen-rte.so.0 >> libmca_common_sm.so.1.0.0 libmpi_f77.so.0.0.1 libopen-rte.so.0.0.0 >> libmpi.so.0libmpi_f90.so.0 > libopenmpi_malloc.so.0 >> libmpi.so.0.0.2libmpi_f90.so.0.0.1 >> libopenmpi_malloc.so.0.0.0 >> libmpi_cxx.so.0libopen-pal.so.0 mpi.mod >> libmpi_cxx.so.0.0.1libopen-pal.so.0.0.0 >> isis:/usr/lib64/mpi/gcc/openmpi # >> >> Thanks all, >> >> Martin Rushton > This email and any attachments to it may be confidential and are > intended solely for the use of the individual to whom it is addressed. > If you are not the intended recipient of this email, you must neither > take any action based upon its contents, nor copy or show it to > anyone. Please contact the sender if you believe you have received > this email in error. QinetiQ may monitor email traffic data and also > the content of email for the purposes of security. QinetiQ Limited > (Registered in England & Wales: Company Number: 3796233) Registered > office: Cody Technology Park, Ively Road, Farnborough, Hampshire, GU14 > 0LX http://www.qinetiq.com. > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users ___ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users The QinetiQ e-mail privacy policy and company information is detailed elsewhere in the body of this email.
[OMPI users] Installation of openmpi-1.4.4
Dear OMPI Users, I have just read the messages from Martin Rushton and Jeff Squyres and have been having the same problem trying to get openmp-1.4.4 to work. My specs are below: Xeon(R) CPU 5335 2.00 GHz Linux SUSE 11.4 (x86_64) Linux 2.6.371-1.2 desktop x86_64 I go through the compilation process with the commands: ./configure --prefix=/opt/openmpi CC=icc CXX=icpc F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee config.out make -j 4 all 2>&1 | tee make.out make install 2>&1 | tee install.out. The entire process seems to go properly but when I try to use an example it doesn't work properly. mpicc hello_c.c -o hello_c compiles properly. However, "./hello_c" gives an error message that it cannot find the file libmpi_so.0.There are at least 3 copies of the file present as found by the search command but none of these are found. I have checked the permissions and they seem to be OK so I am at the same point as Martin Rushton. I hope that somebody comes up with an anser soon. Amos Leffler
Re: [OMPI users] Installation of openmpi-1.4.4
Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, per your configure line? On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: > Dear OMPI Users, > I have just read the messages from Martin Rushton and Jeff Squyres > and have been having the same problem trying to get openmp-1.4.4 to work. My > specs are below: >Xeon(R) CPU 5335 2.00 GHz >Linux SUSE 11.4 (x86_64) >Linux 2.6.371-1.2 desktop x86_64 > I go through the compilation process with the commands: > ./configure --prefix=/opt/openmpi CC=icc CXX=icpc > F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee config.out >make -j 4 all 2>&1 | tee make.out >make install 2>&1 | tee install.out. > The entire process seems to go properly but when I try to use an example it > doesn't work properly. >mpicc hello_c.c -o hello_c > compiles properly. However, >"./hello_c" gives an error message that it cannot > find the file libmpi_so.0.There are at least 3 copies of the file present > as found by the search command but none of these are found. I have checked > the permissions and they seem to be OK so I am at the same point as Martin > Rushton. I hope that somebody comes up with an anser soon. > > Amos Leffler > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] Installation of openmpi-1.4.4
Is the path to your opempi libraries in your LD_LIBRARY_PATH? -- Prentice On 12/21/2011 01:56 PM, amosl...@gmail.com wrote: > Dear OMPI Users, > I have just read the messages from Martin Rushton and Jeff > Squyres and have been having the same problem trying to get > openmp-1.4.4 to work. My specs are below: >Xeon(R) CPU 5335 2.00 GHz >Linux SUSE 11.4 (x86_64) >Linux 2.6.371-1.2 desktop x86_64 > I go through the compilation process with the commands: > ./configure --prefix=/opt/openmpi CC=icc > CXX=icpc F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | > tee config.out >make -j 4 all 2>&1 | tee make.out >make install 2>&1 | tee install.out. > The entire process seems to go properly but when I try to use an > example it doesn't work properly. >mpicc hello_c.c -o hello_c > compiles properly. However, >"./hello_c" gives an error message that it > cannot find the file libmpi_so.0.There are at least 3 copies of > the file present as found by the search command but none of these are > found. I have checked the permissions and they seem to be OK so I am > at the same point as Martin Rushton. I hope that somebody comes up > with an anser soon. > > > Amos Leffler > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] Installation of openmpi-1.4.4
You probably need also to launch the program with mpiexec (mpiexec -np 4 ./hello_c), not just ./hello_c as your email suggests you did. On Dec 21, 2011, at 2:12 PM, Ralph Castain wrote: > Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, per > your configure line? > > > On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: > >> Dear OMPI Users, >> I have just read the messages from Martin Rushton and Jeff Squyres >> and have been having the same problem trying to get openmp-1.4.4 to work. >> My specs are below: >> Xeon(R) CPU 5335 2.00 GHz >> Linux SUSE 11.4 (x86_64) >> Linux 2.6.371-1.2 desktop x86_64 >> I go through the compilation process with the commands: >> ./configure --prefix=/opt/openmpi CC=icc CXX=icpc >> F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee config.out >> make -j 4 all 2>&1 | tee make.out >> make install 2>&1 | tee install.out. >> The entire process seems to go properly but when I try to use an example it >> doesn't work properly. >> mpicc hello_c.c -o hello_c >> compiles properly. However, >> "./hello_c" gives an error message that it cannot >> find the file libmpi_so.0.There are at least 3 copies of the file >> present as found by the search command but none of these are found. I have >> checked the permissions and they seem to be OK so I am at the same point as >> Martin Rushton. I hope that somebody comes up with an anser soon. >> >> Amos Leffler >> ___ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] Installation of openmpi-1.4.4
Not really - we support singletons, so that should work. The key is to have LD_LIBRARY_PATH set correctly in the environment. On Dec 21, 2011, at 1:08 PM, Gustavo Correa wrote: > You probably need also to launch the program with mpiexec (mpiexec -np 4 > ./hello_c), > not just ./hello_c as your email suggests you did. > > On Dec 21, 2011, at 2:12 PM, Ralph Castain wrote: > >> Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, per >> your configure line? >> >> >> On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: >> >>> Dear OMPI Users, >>> I have just read the messages from Martin Rushton and Jeff Squyres >>> and have been having the same problem trying to get openmp-1.4.4 to work. >>> My specs are below: >>> Xeon(R) CPU 5335 2.00 GHz >>> Linux SUSE 11.4 (x86_64) >>> Linux 2.6.371-1.2 desktop x86_64 >>> I go through the compilation process with the commands: >>> ./configure --prefix=/opt/openmpi CC=icc CXX=icpc >>> F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee config.out >>> make -j 4 all 2>&1 | tee make.out >>> make install 2>&1 | tee install.out. >>> The entire process seems to go properly but when I try to use an example it >>> doesn't work properly. >>> mpicc hello_c.c -o hello_c >>> compiles properly. However, >>> "./hello_c" gives an error message that it cannot >>> find the file libmpi_so.0.There are at least 3 copies of the file >>> present as found by the search command but none of these are found. I have >>> checked the permissions and they seem to be OK so I am at the same point as >>> Martin Rushton. I hope that somebody comes up with an anser soon. >>> >>> Amos Leffler >>> ___ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> ___ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] Installation of openmpi-1.4.4
Hi Ralph, Yes I did add to the LD_LIBRARY_PATH in the .bashrc file. Amos L. On Wed, Dec 21, 2011 at 2:12 PM, Ralph Castain wrote: > Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, per > your configure line? > > > On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: > > > Dear OMPI Users, > > I have just read the messages from Martin Rushton and Jeff > Squyres and have been having the same problem trying to get openmp-1.4.4 to > work. My specs are below: > >Xeon(R) CPU 5335 2.00 GHz > >Linux SUSE 11.4 (x86_64) > >Linux 2.6.371-1.2 desktop x86_64 > > I go through the compilation process with the commands: > > ./configure --prefix=/opt/openmpi CC=icc > CXX=icpc F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee > config.out > >make -j 4 all 2>&1 | tee make.out > >make install 2>&1 | tee install.out. > > The entire process seems to go properly but when I try to use an example > it doesn't work properly. > >mpicc hello_c.c -o hello_c > > compiles properly. However, > >"./hello_c" gives an error message that it > cannot find the file libmpi_so.0.There are at least 3 copies of the > file present as found by the search command but none of these are found. I > have checked the permissions and they seem to be OK so I am at the same > point as Martin Rushton. I hope that somebody comes up with an anser soon. > > > Amos Leffler > > ___ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users >
Re: [OMPI users] Installation of openmpi-1.4.4
Hi I put the /opt/openmpi.org in the bashrc file. Amos On Wed, Dec 21, 2011 at 2:12 PM, Ralph Castain wrote: > Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, per > your configure line? > > > On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: > > > Dear OMPI Users, > > I have just read the messages from Martin Rushton and Jeff > Squyres and have been having the same problem trying to get openmp-1.4.4 to > work. My specs are below: > >Xeon(R) CPU 5335 2.00 GHz > >Linux SUSE 11.4 (x86_64) > >Linux 2.6.371-1.2 desktop x86_64 > > I go through the compilation process with the commands: > > ./configure --prefix=/opt/openmpi CC=icc > CXX=icpc F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee > config.out > >make -j 4 all 2>&1 | tee make.out > >make install 2>&1 | tee install.out. > > The entire process seems to go properly but when I try to use an example > it doesn't work properly. > >mpicc hello_c.c -o hello_c > > compiles properly. However, > >"./hello_c" gives an error message that it > cannot find the file libmpi_so.0.There are at least 3 copies of the > file present as found by the search command but none of these are found. I > have checked the permissions and they seem to be OK so I am at the same > point as Martin Rushton. I hope that somebody comes up with an anser soon. > > > Amos Leffler > > ___ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users >
Re: [OMPI users] Installation of openmpi-1.4.4
When I pushed "Send" on this email I thought immediately: " ... hmm, Ralph or Jeff will say this is wrong ..." Wow! Support to singletons! I haven't read this word since long forgotten readings in Set Theory. So, if you run a single process, you can do away with mpiexec, and pretend that the code were serial, right? Amazing. You guys think of all edge cases! Happy Holidays! Gus Correa [standing corrected] On Dec 21, 2011, at 4:44 PM, Ralph Castain wrote: > Not really - we support singletons, so that should work. The key is to have > LD_LIBRARY_PATH set correctly in the environment. > > On Dec 21, 2011, at 1:08 PM, Gustavo Correa wrote: > >> You probably need also to launch the program with mpiexec (mpiexec -np 4 >> ./hello_c), >> not just ./hello_c as your email suggests you did. >> >> On Dec 21, 2011, at 2:12 PM, Ralph Castain wrote: >> >>> Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, per >>> your configure line? >>> >>> >>> On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: >>> Dear OMPI Users, I have just read the messages from Martin Rushton and Jeff Squyres and have been having the same problem trying to get openmp-1.4.4 to work. My specs are below: Xeon(R) CPU 5335 2.00 GHz Linux SUSE 11.4 (x86_64) Linux 2.6.371-1.2 desktop x86_64 I go through the compilation process with the commands: ./configure --prefix=/opt/openmpi CC=icc CXX=icpc F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee config.out make -j 4 all 2>&1 | tee make.out make install 2>&1 | tee install.out. The entire process seems to go properly but when I try to use an example it doesn't work properly. mpicc hello_c.c -o hello_c compiles properly. However, "./hello_c" gives an error message that it cannot find the file libmpi_so.0.There are at least 3 copies of the file present as found by the search command but none of these are found. I have checked the permissions and they seem to be OK so I am at the same point as Martin Rushton. I hope that somebody comes up with an anser soon. Amos Leffler ___ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users >>> >>> >>> ___ >>> users mailing list >>> us...@open-mpi.org >>> http://www.open-mpi.org/mailman/listinfo.cgi/users >> >> >> ___ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
Re: [OMPI users] Installation of openmpi-1.4.4
Hi, Attached is the output I got from using mpiexec. Amos On Wed, Dec 21, 2011 at 5:17 PM, Gustavo Correa wrote: > When I pushed "Send" on this email > I thought immediately: " ... hmm, Ralph or Jeff will say this is wrong ..." > > Wow! Support to singletons! > I haven't read this word since long forgotten readings in Set Theory. > So, if you run a single process, you can do away with mpiexec, > and pretend that the code were serial, right? > Amazing. You guys think of all edge cases! > > Happy Holidays! > > Gus Correa > [standing corrected] > > On Dec 21, 2011, at 4:44 PM, Ralph Castain wrote: > > > Not really - we support singletons, so that should work. The key is to > have LD_LIBRARY_PATH set correctly in the environment. > > > > On Dec 21, 2011, at 1:08 PM, Gustavo Correa wrote: > > > >> You probably need also to launch the program with mpiexec (mpiexec -np > 4 ./hello_c), > >> not just ./hello_c as your email suggests you did. > >> > >> On Dec 21, 2011, at 2:12 PM, Ralph Castain wrote: > >> > >>> Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, > per your configure line? > >>> > >>> > >>> On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: > >>> > Dear OMPI Users, > I have just read the messages from Martin Rushton and Jeff > Squyres and have been having the same problem trying to get openmp-1.4.4 to > work. My specs are below: > Xeon(R) CPU 5335 2.00 GHz > Linux SUSE 11.4 (x86_64) > Linux 2.6.371-1.2 desktop x86_64 > I go through the compilation process with the commands: > ./configure --prefix=/opt/openmpi CC=icc > CXX=icpc F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee > config.out > make -j 4 all 2>&1 | tee make.out > make install 2>&1 | tee install.out. > The entire process seems to go properly but when I try to use an > example it doesn't work properly. > mpicc hello_c.c -o hello_c > compiles properly. However, > "./hello_c" gives an error message that it > cannot find the file libmpi_so.0.There are at least 3 copies of the > file present as found by the search command but none of these are found. I > have checked the permissions and they seem to be OK so I am at the same > point as Martin Rushton. I hope that somebody comes up with an anser soon. > > Amos Leffler > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > >>> > >>> > >>> ___ > >>> users mailing list > >>> us...@open-mpi.org > >>> http://www.open-mpi.org/mailman/listinfo.cgi/users > >> > >> > >> ___ > >> users mailing list > >> us...@open-mpi.org > >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > ___ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > temp.out Description: Binary data
Re: [OMPI users] Installation of openmpi-1.4.4
On Dec 21, 2011, at 3:09 PM, amosl...@gmail.com wrote: > Hi Ralph, > Yes I did add to the LD_LIBRARY_PATH in the .bashrc file. That is fine, but did you source that .bashrc so it was in your current environment? It doesn't matter what is in the .bashrc file - what matters is the current environment when you execute the command. > >Amos L. > > On Wed, Dec 21, 2011 at 2:12 PM, Ralph Castain wrote: > Did you remember to set your LD_LIBRARY_PATH to include /opt/openmpi, per > your configure line? > > > On Dec 21, 2011, at 11:56 AM, amosl...@gmail.com wrote: > > > Dear OMPI Users, > > I have just read the messages from Martin Rushton and Jeff > > Squyres and have been having the same problem trying to get openmp-1.4.4 to > > work. My specs are below: > >Xeon(R) CPU 5335 2.00 GHz > >Linux SUSE 11.4 (x86_64) > >Linux 2.6.371-1.2 desktop x86_64 > > I go through the compilation process with the commands: > > ./configure --prefix=/opt/openmpi CC=icc CXX=icpc > > F77=ifort F90=ifort "FCFLAGS=-O3 -i8" "FFLAGS=-O3 -i8" 2>&1 | tee config.out > >make -j 4 all 2>&1 | tee make.out > >make install 2>&1 | tee install.out. > > The entire process seems to go properly but when I try to use an example it > > doesn't work properly. > >mpicc hello_c.c -o hello_c > > compiles properly. However, > >"./hello_c" gives an error message that it > > cannot find the file libmpi_so.0.There are at least 3 copies of the > > file present as found by the search command but none of these are found. I > > have checked the permissions and they seem to be OK so I am at the same > > point as Martin Rushton. I hope that somebody comes up with an anser soon. > > > > Amos Leffler > > ___ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users > > ___ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users
