[SGE-discuss] qlogin / qrsh not working if user shell is bash ...
Hello, first post to the list! I've been using version 8.1.9 for over a year now and it works rather well. I do have an issue with qlogin / qrsh though, as I can't get it to work when the user's shell is set to bash - works well when the user's shell is set to tcsh. qsub works well no matter what the user's shell is set to. I even tried while removing start up scripts but I keep getting the same warning: "waiting for interactive job to be scheduled ...Your "qlogin" request could not be scheduled, try again later." It's not a resource issue and I reserved a test queue to troubleshoot this. It's systematic, tcsh as a user shell works but bash doesn't. I'm using the builtin commands... $ qconf -sconf | grep login login_shells bash,sh,ksh,csh,tcsh qlogin_command builtin qlogin_daemonbuiltin rlogin_command builtin rlogin_daemonbuiltin Any help on how to troubleshoot this would be greatly appreciated. Regards, --- Sylvain Milot (sylv...@bic.mni.mcgill.ca) (sylvain.mi...@mcgill.ca) Brain Imaging Centre Montreal Neurological Institute 3801 University Street, Webster 2B, Room 206 Montreal, Qc., Canada, H3A 2B4 Phone : (514) 398-4965, Fax: 398-8948 Mobile : (514) 712-1768 Office : Room NW119 (North Wing) ___ SGE-discuss mailing list SGE-discuss@liv.ac.uk https://arc.liv.ac.uk/mailman/listinfo/sge-discuss
Re: [SGE-discuss] qlogin / qrsh not working if user shell is bash ...
Hi, > Am 26.03.2018 um 18:23 schrieb Sylvain MILOT : > > > Hello, > > first post to the list! > > I've been using version 8.1.9 for over a year now and it works rather well. > > I do have an issue with qlogin / qrsh though, as I can't get it to work when > the user's shell is set to bash - works well when the user's shell is set to > tcsh. > > qsub works well no matter what the user's shell is set to. > > I even tried while removing start up scripts but I keep getting the same > warning: > > "waiting for interactive job to be scheduled ...Your "qlogin" request could > not be scheduled, try again later." > > It's not a resource issue and I reserved a test queue to troubleshoot this. > It's systematic, tcsh as a user shell works but bash doesn't. > > I'm using the builtin commands... > > $ qconf -sconf | grep login > login_shells bash,sh,ksh,csh,tcsh > qlogin_command builtin > qlogin_daemonbuiltin > rlogin_command builtin > rlogin_daemonbuiltin > > Any help on how to troubleshoot this would be greatly appreciated. Is Bash really Bash in your setup? Sometimes it's a link to Dash. Although this shouldn't hurt, it's worth to check before looking further. -- Reuti > Regards, > > --- > Sylvain Milot (sylv...@bic.mni.mcgill.ca) > (sylvain.mi...@mcgill.ca) > Brain Imaging Centre > Montreal Neurological Institute > 3801 University Street, Webster 2B, Room 206 > Montreal, Qc., Canada, H3A 2B4 > Phone : (514) 398-4965, Fax: 398-8948 > Mobile : (514) 712-1768 > Office : Room NW119 (North Wing) > ___ > SGE-discuss mailing list > SGE-discuss@liv.ac.uk > https://arc.liv.ac.uk/mailman/listinfo/sge-discuss > ___ SGE-discuss mailing list SGE-discuss@liv.ac.uk https://arc.liv.ac.uk/mailman/listinfo/sge-discuss
Re: [SGE-discuss] qlogin / qrsh not working if user shell is bash ...
Hallo Reuti, On Mon, 26 Mar 2018, Reuti wrote: Hi, Am 26.03.2018 um 18:23 schrieb Sylvain MILOT : Hello, first post to the list! I've been using version 8.1.9 for over a year now and it works rather well. I do have an issue with qlogin / qrsh though, as I can't get it to work when the user's shell is set to bash - works well when the user's shell is set to tcsh. qsub works well no matter what the user's shell is set to. I even tried while removing start up scripts but I keep getting the same warning: "waiting for interactive job to be scheduled ...Your "qlogin" request could not be scheduled, try again later." It's not a resource issue and I reserved a test queue to troubleshoot this. It's systematic, tcsh as a user shell works but bash doesn't. I'm using the builtin commands... $ qconf -sconf | grep login login_shells bash,sh,ksh,csh,tcsh qlogin_command builtin qlogin_daemonbuiltin rlogin_command builtin rlogin_daemonbuiltin Any help on how to troubleshoot this would be greatly appreciated. Is Bash really Bash in your setup? Sometimes it's a link to Dash. Although this shouldn't hurt, it's worth to check before looking further. no links. I have also tried with /bin/dash, while sh is a symlink to bash - same behavior. I compared the strace output of a qsh call for bash and tcsh, searching for clues, but aside from an apparent time-out, I didn't see anything obvious. Sylvain --- Sylvain Milot (sylv...@bic.mni.mcgill.ca) (sylvain.mi...@mcgill.ca) Brain Imaging Centre Montreal Neurological Institute 3801 University Street, Webster 2B, Room 206 Montreal, Qc., Canada, H3A 2B4 Phone : (514) 398-4965, Fax: 398-8948 Mobile : (514) 712-1768 Office : Room NW119 (North Wing) ___ SGE-discuss mailing list SGE-discuss@liv.ac.uk https://arc.liv.ac.uk/mailman/listinfo/sge-discuss
Re: [SGE-discuss] qlogin / qrsh not working if user shell is bash ...
Hi again, On Mon, 26 Mar 2018, Sylvain MILOT wrote: I do have an issue with qlogin / qrsh though, as I can't get it to work when the user's shell is set to bash - works well when the user's shell is set to tcsh. qsub works well no matter what the user's shell is set to. I even tried while removing start up scripts but I keep getting the same warning: "waiting for interactive job to be scheduled ...Your "qlogin" request could not be scheduled, try again later." It's not a resource issue and I reserved a test queue to troubleshoot this. It's systematic, tcsh as a user shell works but bash doesn't. I'm using the builtin commands... $ qconf -sconf | grep login login_shells bash,sh,ksh,csh,tcsh qlogin_command builtin qlogin_daemonbuiltin rlogin_command builtin rlogin_daemonbuiltin Any help on how to troubleshoot this would be greatly appreciated. Is Bash really Bash in your setup? Sometimes it's a link to Dash. Although this shouldn't hurt, it's worth to check before looking further. no links. I have also tried with /bin/dash, while sh is a symlink to bash - same behavior. I compared the strace output of a qsh call for bash and tcsh, searching for clues, but aside from an apparent time-out, I didn't see anything obvious. I found the error of my ways ... it was indeed related to resources - I had forgotten about some quota restrictions I had enforced for testing purposes ... for my particular test user. sorry for the noise and thanks for listening. Sylvain --- Sylvain Milot (sylv...@bic.mni.mcgill.ca) (sylvain.mi...@mcgill.ca) Brain Imaging Centre Montreal Neurological Institute 3801 University Street, Webster 2B, Room 206 Montreal, Qc., Canada, H3A 2B4 Phone : (514) 398-4965, Fax: 398-8948 Mobile : (514) 712-1768 Office : Room NW119 (North Wing) ___ SGE-discuss mailing list SGE-discuss@liv.ac.uk https://arc.liv.ac.uk/mailman/listinfo/sge-discuss
