[PyMOL] selecting individual states

2004-03-03 Thread Neema Salimi 
So I loaded 100 pdbs into one object, states 1-100.  I wanted to color
all states by their B 
factors, using the color_b script.  When I use the script, it colors all
states by the B factors 
in state 1.  I saw a previous message with a similar question about doing 
dss by frame 
and the suggestion was this:

mset 1 -5
mdo 1, dss state=1
mdo 2, dss state=2
.
.
.

When I tried to run the mdo commands, the error message said "Invalid
arguments for 
the mdo command."  Can someone point me on to the right track for doing
things like 
color_b and dss state-by-state?

Neema Salimi
nsali...@itsa.ucsf.edu
Graduate Student - Agard Laboratory
Program in Biophysics
University of California, San Francisco

Re: [PyMOL] What is the best 3 button mouse for PyMOL on a Mac OSX?

2005-08-15 Thread Neema Salimi 
I agree with the Logitech sentiment.  I have a MX 700 for my iMac,  
and installing the software was a bad idea when I had Panther.  I  
haven't tried installing it on Tiger, but all the buttons (8 of them)  
are assignable in the System preferences menu.  In addition, it's  
cordless, and the battery lasts a good while before it needs charging.



On Aug 15, 2005, at 9:00 AM, geek theory wrote:



I have one of each of the Logitech MX 500, 510, 518 series and they
all have worked (and are still working) fine for me, albeit on windows
and linux.  I don't have any experience with the cordless version, but
after a little google searching it looks like the logitech software is
buggy on macs.  You might try uninstalling it and letting the OS think
its a generic 3-button mouse.

hope it helps,
-Tzintzuni Garcia


On 8/12/05, Sabuj Pattanayek  wrote:


I use a cheap microsoft optical (or basic optical) usb mouse on  
linux,

so it should work on your macosx.

If you want something more configurable under macosx and don't  
want to

destroy the "Appleness" of your computer with an MS mouse then this
might work for you http://www.apple.com/mightymouse/ . I hear  
there will

be a wireless version soon.

Sarina Bromberg wrote:


I have a logitech MX700 Cordless Optical Mouse that claims to be  
a 3-

button mouse, but I can never get it to produce the results provided
for 3-button viewing or editing by PyMOL.  Perhaps I do not have it
configured correctly (I cannot find a clue in the instructions or in
simple experiments), or perhaps this is not the kind of 3-button   
mouse

I need. Does anyone have a good solution?
Tx,
Sarina Bromberg


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