Re: Introducing Org-transclusion
Ihor Radchenko writes: > > Welcome ;) > Thank you. > You have my +100500 to have this package as part of Org :D Thank you again :) Is there anything I can/should do to make this happen? I would be happy to email the whole package as a "patch" for code review, if this were the way but I feel that might clutter this mailing list too much with a large amount of text (?) > The package may allow several interesting things in Org: > > 1. An alternative way to structure headings > Currently, we have a rigid headline structures in Org and > alternative tag-based approaches like Org Roam. Headline > transclusion will allow same subtree under several headings (aka > file system symlinks). Org-transclusion will be probably of help here. I didn't think it in this frame (like symlinks) but it has the :level property to control the heading level of the transclusion, which can be different to the original. > 2. A much faster tangle system. If we can directly transclude and sync >contents of source blocks with actual programming language buffer, >C-c ' can trivially support flycheck-mode and provide a more >IDE-like experience while still benefiting from literate programming >style. It has ":src lang" property and can transclude a specific range of source code into Org's source block. It is essentially read-only copy of the original, and you can use "C-c C-c" as a normal Org source block to execute/evaluate it. For flycheck-mode, I am not sure; I don't use it (I use built-in flymake). It may be an interesting experiment for me, too. One thing is that transcluded source blocks are read-only. I think it will require a bit of work to get the correction to work on both the transclusion and source buffers. > 3. Visible #+INCLUDE directives. I recall multiple requests to be able >to see the INCLUDEd files right inside source Org buffer. There is a parallel between #+INCLUDE and #+TRANSCLUDE. Transclusions are read-only copy so they can be exported. I think in many cases they can work as "visible #+INCLUDE". But #+TRANSCLUDE does not support all the features #+INCLUDE support. For example, noweb to include yet another block of text has been reported to output an error. > 4. Dynamic Org files like agenda views, but made of transcluded >headlines. Such files can be kept in Org mode with all its features. Maybe... I don't use Org-agenda, so it didn't occur to me to test this use case. > Transculation has been requested many times by different users. Some > relevant links: > - > https://emacs.stackexchange.com/questions/51814/embed-org-task-list-from-other-subtree > - > https://www.reddit.com/r/emacs/comments/dz5xeb/is_there_a_way_to_include_an_org_file_in_another/ > - > https://www.reddit.com/r/emacs/comments/flxqei/cloningmirroring_a_region_to_some_other_location/fl22ele/ > - https://lists.gnu.org/archive/html/emacs-devel/2020-04/msg00141.html > - > https://emacs.stackexchange.com/questions/57608/split-code-across-multiple-src-blocks > - https://lists.gnu.org/archive/html/help-gnu-emacs/2020-06/msg00151.html > - > https://reddit.com/r/emacs/comments/debean/possible_to_embed_another_org_file_or_entry_in_an/]] Org-transclusion might provide some steps forward for some of the desired functionality discussed in these threads. Especially for the "cloning" a body of text across multiple buffers, I have factored out this part and created a stand-alone library called "Text-clone". It is available in the same repository at https://github.com/nobiot/org-transclusion/blob/main/docs/text-clone.md. This separation was born out of a suggestion by alphapapa on Reddit. I feel that Text-clone can be taken further than the use in Org-transclusion (I feel that Org-transclusion is only one use case for Text-clone). > Other attempted implementations: > - https://github.com/legalnonsense/org-clones > - https://github.com/magnars/multifiles.el > - https://github.com/vspinu/lentic > - https://github.com/whacked/transclusion-minor-mode Yes, I have looked at some of them and also this question from John Kitchen, recorded by alphapapa: (https://github.com/alphapapa/transclusion-in-emacs#org-mode). I also looked at https://github.com/gregdetre/emacs-freex. Org-clones have given me some inspirations. Multifiles looked to be too complicated for me to understand and abandoned for a long time. I was not aware of Lentic. I dismissed Transclusion-minor-mode because it requires a server. Org-transclusion is rather simple. It only requires Emacs 27.1 and Org 9.4. > Best, > Ihor
Re: Introducing Org-transclusion
Juan Manuel Macías writes: > I installed your package a few months ago and I have to say that it > works quite well, although I have not had, at the moment, the > opportunity to make intensive use of it. What I can say is that the > concept seems very interesting to me. Very nice package. Thank you for your kind words.
Re: send agenda-weekly-view via email html formated
>>> "IR" == Ihor Radchenko writes: > Uwe Brauer writes: >> Thanks, works very nicely, I only will send it inline, because then it is >> nicely displayed in HTML enabled MTA. > ---(mml-attach-file (file-name-concat > (temporary-file-directory)"agenda.html") > +++(mml-attach-file (file-name-concat > (temporary-file-directory)"agenda.html") nil nil "inline" Right, maybe such a function should be included in org? Uwe smime.p7s Description: S/MIME cryptographic signature
Re: [BUG] Org V 9.5 error when ~/.cache doesn't exist [9.5 (9.5-gd4e192 @ c:/Users/scott/.emacs.d/straight/build/org/)]
Scott Otterson writes: > Apparently, org version 9.5 expects the directory "~/.cache" to exist, and > if it doesn't, it terminates with an error. I'd suggest that org mode > makes this directory if it needs it. Thanks for reporting! Fixed in 6621ee32e. Best, Ihor
Re: [BUG] after update to 9.5, starting org mode results in cache error messages [9.5 (9.5-gd4e192 @ c:/Users/scott/.emacs.d/straight/build/org/)]
Greg Coladonato writes: > I get a similar error to Scott's every time I save an org-mode file. I > turned on backtrace and got this output: Thanks for reporting and providing the detailed backtrace! Backtrace is really strange because cache is clearly updated upon changing the file, but somehow somewhere a stale element is still returned. Given that you are using org-roam, the only suspect that may create stale copies of cached elements is org-element-parse-buffer. The attached patch is making sure that org-element-parse-buffer never tries to reuse cache. Can you try the patch and see if it helps? Best, Ihor >From cc2b4081796ed3caeb193b45588bfb9fd3d77625 Mon Sep 17 00:00:00 2001 Message-Id: From: Ihor Radchenko Date: Mon, 1 Nov 2021 20:38:11 +0800 Subject: [PATCH] org-element--current-element: Do not use cache --- lisp/org-element.el | 342 1 file changed, 157 insertions(+), 185 deletions(-) diff --git a/lisp/org-element.el b/lisp/org-element.el index 9fa6fd5e2..caa714f34 100644 --- a/lisp/org-element.el +++ b/lisp/org-element.el @@ -4106,7 +4106,7 @@ ;;; Parsing Element Starting At Point ;; point. (defvar org-element--cache-sync-requests); Declared later -(defun org-element--current-element (limit &optional granularity mode structure add-to-cache) +(defun org-element--current-element (limit &optional granularity mode structure) "Parse the element starting at point. Return value is a list like (TYPE PROPS) where TYPE is the type @@ -4138,190 +4138,162 @@ (defun org-element--current-element (limit &optional granularity mode structure This function assumes point is always at the beginning of the element it has to parse." - (let* ((element (and (not (buffer-narrowed-p)) - (org-element--cache-active-p) - (not org-element--cache-sync-requests) - (org-element--cache-find (point) t))) - (element (progn (while (and element - (not (and (eq (point) (org-element-property :begin element)) - (eq mode (org-element-property :mode element) - (setq element (org-element-property :parent element))) - element)) - (old-element element) - (element (when - (pcase (org-element-property :granularity element) -(`nil t) -(`object t) -(`element (not (memq granularity '(nil object -(`greater-element (not (memq granularity '(nil object element -(`headline (eq granularity 'headline))) -element))) -(if element -element - (save-excursion -(let ((case-fold-search t) - ;; Determine if parsing depth allows for secondary strings - ;; parsing. It only applies to elements referenced in - ;; `org-element-secondary-value-alist'. - (raw-secondary-p (and granularity (not (eq granularity 'object - result) - (setq - result - (cond -;; Item. -((eq mode 'item) - (org-element-item-parser limit structure raw-secondary-p)) -;; Table Row. -((eq mode 'table-row) (org-element-table-row-parser limit)) -;; Node Property. -((eq mode 'node-property) (org-element-node-property-parser limit)) -;; Headline. -((org-with-limited-levels (org-at-heading-p)) - (org-element-headline-parser limit raw-secondary-p)) -;; Sections (must be checked after headline). -((eq mode 'section) (org-element-section-parser limit)) -((eq mode 'first-section) - (org-element-section-parser - (or (save-excursion (org-with-limited-levels (outline-next-heading))) - limit))) -;; Comments. -((looking-at "^[ \t]*#\\(?: \\|$\\)") - (org-element-comment-parser limit)) -;; Planning. -((and (eq mode 'planning) - (eq ?* (char-after (line-beginning-position 0))) - (looking-at org-planning-line-re)) - (org-element-planning-parser limit)) -;; Property drawer. -((and (pcase mode - (`planning (eq ?* (char-after (line-beginning-position 0 - ((or `property-drawer `top-comment) - (save-excursion - (beginning-of-line 0) - (not (looking-at "[[:blank:]]*$" - (_ nil)) - (looking-at org-property-drawer-re)) - (org-element-property-drawer-parser limit)) -;; When not at bol, point is at the beginning of an item or -;; a footnote definition: next item is always a paragraph. -((not (bolp)) (org-element-paragraph-parser limit (list (point -;; Clock. -((looking
Re: [BUG] Unregistered buffer modifications detected [9.5 (9.5-g49e2f6 @ /Users/myuser/.emacs.d/straight/29/straight/build/org/)]
Aaron Jensen writes: > On Sat, Oct 30, 2021 at 11:16 PM Aaron Jensen wrote: >> >> Done, I'll report back. > > Another one, no trace: > > Warning (emacs): Emacs reader failed to read data for # config.org>:org-element--cache. The error was: "Invalid read syntax: > \"#\", 1, 4670" Disable showing Disable logging Thanks! I have seen this one. Now can confirm that it is not just on my system. This warning indicates a likely bug in Emacs read/write. I disabled this warning on latest main to not irritate users. Best, Ihor
Re: send agenda-weekly-view via email html formated
Uwe Brauer writes: > Right, maybe such a function should be included in org? If there is sufficient interest and someone prepares a patch, why not? But, no other people are participating in this thread for now.
Re: Introducing Org-transclusion
Noboru Ota writes: >> You have my +100500 to have this package as part of Org :D > > Thank you again :) Is there anything I can/should do to make this > happen? I would be happy to email the whole package as a "patch" for > code review, if this were the way but I feel that might clutter this > mailing list too much with a large amount of text (?) Attached patches is the workflow in this mailing list. Do not worry about cluttering. Clutter is meaningless text, not a patch. We have recommendations about submitting new patches at https://orgmode.org/worg/org-contribute.html Once you submit _something_, core maintainers will be more inclined to jump in and provide their opinion on including the new feature. >> 2. A much faster tangle system. If we can directly transclude and sync >>contents of source blocks with actual programming language buffer, >>C-c ' can trivially support flycheck-mode and provide a more >>IDE-like experience while still benefiting from literate programming >>style. > > It has ":src lang" property and can transclude a specific range of > source code into Org's source block. It is essentially read-only copy of > the original, and you can use "C-c C-c" as a normal Org source block to > execute/evaluate it. I actually had something slightly different in mind. If we have a way to copy and sync text between different places, we can as well compile all the related source blocks into a temporary buffer in the correct prog-mode. Then, C-c ' can simply jump to that buffer with all the code from different source blocks bundled together. Changes in the temporary buffer can then be synced on exit. > For flycheck-mode, I am not sure; I don't use it (I use built-in > flymake). It may be an interesting experiment for me, too. One thing > is that transcluded source blocks are read-only. I think it will > require a bit of work to get the correction to work on both the > transclusion and source buffers. Can be flymake as well. The problem with current implementation of source blocks is that only the code from individual source block is visible for flymake. Imagine the following #+begin_src emacs-lisp (progn (message "A") #+end_src #+begin_src emacs-lisp (message "B")) #+end_src If you open the top source block with C-c ', flymake will report errors because of unmatched parenthesis. The errors will be correct from flymake's perspective because all flymake will see is text in the first source block. However, the code is correct when you tangle the file. If we can have a single buffer with all the source blocks, C-c ' can simply jump to that buffer and narrow to region representing the current source block. flymake will behave correctly because all the code will be present in the buffer. Moreover, the user may widen the buffer conveniently see all the code together. Tangling will be mostly a question of simply saving the temporary buffer. Trnasclusion is required to correctly keep the temporary code buffer and actual Org file in sync. Of course, things like noweb will be tricky. You may need something similar to bi-directional text transformation like implemented in lentic, when changes in text are not simply mirrored, but the text is also transformed when syncing transcluded regions. You implemented something similar in the :level parameter. > Org-transclusion might provide some steps forward for some of the > desired functionality discussed in these threads. Especially for the > "cloning" a body of text across multiple buffers, I have factored out > this part and created a stand-alone library called "Text-clone". It is > available in the same repository at > https://github.com/nobiot/org-transclusion/blob/main/docs/text-clone.md. I noticed that you are using overlays in text-clone. It may potentially cause slowdown in large Org buffers. Of course, it does not mean that org-transclusion should not be accepted. Just something that may be optimised. Best, Ihor
Re: Installation on offline machines
On Sun, Oct 31, 2021 at 07:39:37PM +, autofrettage wrote: > you could try using the Emacs package elpa-mirror. Thanks - this seems exactly what I need - if the idea of distributing emacs extensions as tar files is completely abandoned. I also see reasons why going this route to deploy extensions is a good idea - and the elpa-mirror package helps out for the "niche" of users who need to deploy the extensions on machines that do not have access to the internet. Auctex also started recommending the install via elpa, but they still offer the "traditional method" (at least on *nix). Best, Chrsitian -- Edmund Christian Herenz (ESO Fellow) Office: M152 ESO Vitacura Email: eher...@eso.org Alonso de Córdova 3107 Phone: +56 2 2463 3047 (Office) Vitacura, Casilla 19001 +56 9 4613 7517 (Mobile) Santiago de Chile, Chile WWW:http://www.sc.eso.org/~eherenz/
Re: Installation on offline machines
> /.../ the elpa-mirror package helps out for the "niche" of > users who need to deploy the extensions on machines that do > not have access to the internet. I found out about and used elpa-mirror when I worked in Windows Subsystem for Linux (WSL). Its connection with the net was somewhat mysterious to me, and elpa-mirror was the answer. WSL may have improved since then. Yours Rasmus
Re: send agenda-weekly-view via email html formated
>>> "IR" == Ihor Radchenko writes: > Uwe Brauer writes: >> Right, maybe such a function should be included in org? > If there is sufficient interest and someone prepares a patch, why not? I think even I am able to provide a patch > But, no other people are participating in this thread for now. That is very true, so better wait. smime.p7s Description: S/MIME cryptographic signature
Re: [BUG] Org V 9.5 error when ~/.cache doesn't exist
On 01/11/2021 18:29, Ihor Radchenko wrote: Scott Otterson writes: Apparently, org version 9.5 expects the directory "~/.cache" to exist, and if it doesn't, it terminates with an error. I'd suggest that org mode makes this directory if it needs it. Thanks for reporting! Fixed in 6621ee32e. Ihor, your fix affects linux as well. .cache directory may be missed in fresh accounts. E.g. I just have created a new test container (my old one has emacs-25): emacs --batch -L org-mode/lisp/ -l org-persist --eval '(message "%s\n%s" org-persist-directory (org-version nil t))' Loading /etc/emacs/site-start.d/00debian.el (source)... /home/ubuntu/.emacs.d/org-persist/ Org mode version 9.5 (release_9.5-194-g7a6f48 @ /home/ubuntu/org-mode/lisp/) P.S. ~/.cache directory should not be world-readable, so likely it is required to change umask or to explicitly specify permissions while creating it.
Re: [BUG] Org V 9.5 error when ~/.cache doesn't exist
Max Nikulin writes: > Ihor, your fix affects linux as well. .cache directory may be missed in > fresh accounts. E.g. I just have created a new test container (my old > one has emacs-25): You are right. Though creating .cache dir is probably a job for xdg.el, not Org. XDG spec prescribes specific permissions for the XDG directories. I would prefer to send a bug report/feature request to Emacs core rather than fixing this scenario on Emacs side. Best, Ihor
Re: [BUG] Org V 9.5 error when ~/.cache doesn't exist
> Emacs core rather than fixing this scenario on Emacs side. *Org side
[BUG] org-cite-insert ignores JSON entries with editors only [9.5 (9.5-g0a86ad @ /home/rasmus/.emacs.d/elpa/org-9.5/)]
Hi,
I recently used oc-basic and oc-csl but ran into a slight problem when I tried
to cite
"97 Things Every Programmer Should Know — Collective Wisdom from the Experts",
1st ed.; Henney, K., Ed.; O’Reilly Media, Inc., 2010.
...with the command org-cite-insert. Typing "Henney" produced no suggestions.
After editing the JSON file from Zotero manually, making Henney an author
instead of an editor, everything worked as expected.
As you may guess, the book is a collection of expert tips from many different
programmers, and Kevlin Henney is "just" the editor.
The same happened for some other sources having editors, but no authors.
Yours
Rasmus
Emacs : GNU Emacs 27.1 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.23,
cairo version 1.16.0)
of 2021-01-18, modified by Debian
Package: Org mode version 9.5 (9.5-g0a86ad @
/home/schoon/.emacs.d/elpa/org-9.5/)
current state:
==
(setq
org-src-mode-hook '(org-src-babel-configure-edit-buffer
org-src-mode-configure-edit-buffer)
org-link-shell-confirm-function 'yes-or-no-p
org-num-format-function 'org-num-default-format
org-metadown-hook '(org-babel-pop-to-session-maybe)
org-download-annotate-function 'org-download-annotate-default
org-modules '(ol-bibtex ol-docview ol-eww ol-info org-tempo)
org-plantuml-jar-path "/usr/share/plantuml/plantuml.jar"
org-calc-default-modes '(calc-internal-prec 16 calc-float-format (float 16)
calc-angle-mode
deg calc-prefer-frac nil calc-symbolic-mode nil
calc-date-format
( "-" MM "-" DD " " Www (" " hh ":" mm))
calc-display-working-message t)
org-mode-hook '(org-tempo-setup
#[0 "\300\301\302\303\304$\207"
[add-hook change-major-mode-hook org-show-all append local]
5]
#[0 "\300\301\302\303\304$\207"
[add-hook change-major-mode-hook org-babel-show-result-all
append local] 5]
org-babel-result-hide-spec org-babel-hide-all-hashes)
org-archive-hook '(org-attach-archive-delete-maybe)
org-confirm-elisp-link-function 'yes-or-no-p
org-download-file-format-function 'org-download-file-format-default
org-footnote-section nil
org-agenda-before-write-hook '(org-agenda-add-entry-text)
org-metaup-hook '(org-babel-load-in-session-maybe)
org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 "\n\n(fn
ENTRY)"]
org-adapt-indentation t
org-babel-pre-tangle-hook '(save-buffer)
org-file-apps '((auto-mode . emacs) ("\\.mm\\'" . default) ("\\.x?html?\\'" .
system)
("\\.pdf\\'" . "/usr/bin/evince %s"))
org-tab-first-hook '(org-babel-hide-result-toggle-maybe
org-babel-header-arg-expand)
org-babel-load-languages '((emacs-lisp . t) (python . t) (gnuplot . t)
(asymptote . t)
(plantuml . t) (shell . t) (dot . t) (ditaa . t))
org-export-backends '(ascii beamer html latex md odt)
org-babel-python-command "python3"
org-agenda-loop-over-headlines-in-active-region nil
org-src-lang-modes '(("ocaml" . tuareg) ("elisp" . emacs-lisp) ("ditaa" .
artist)
("asymptote" . asy) ("dot" . fundamental) ("sqlite" . sql)
("calc" . fundamental) ("C" . c) ("cpp" . c++) ("C++" .
c++)
("screen" . shell-script) ("shell" . sh) ("bash" . sh)
("plantuml" . plantuml))
org-cite-export-processors '((latex biblatex nil nil) (t basic nil nil))
org-occur-hook '(org-first-headline-recenter)
org-ditaa-jar-path "/usr/share/ditaa/ditaa.jar"
org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
org-cycle-show-empty-lines
org-optimize-window-after-visibility-change)
org-speed-command-hook '(org-speed-command-activate
org-babel-speed-command-activate)
org-footnote-define-inline t
org-babel-tangle-lang-exts '(("asymptote" . "asy") ("python" . "py")
("emacs-lisp" . "el")
("elisp" . "el"))
org-export-before-parsing-hook '(org-attach-expand-links)
org-confirm-shell-link-function 'yes-or-no-p
org-link-parameters '(("info" :follow org-info-open :export org-info-export
:store
org-info-store-link)
("eww" :follow org-eww-open :store org-eww-store-link)
("docview" :follow org-docview-open :export
org-docview-export :store
org-docview-store-link)
("bibtex" :follow org-bibtex-open :store
org-bibtex-store-link)
("attachment" :follow org-attach-follow :complete
org-attach-complete-link)
("id" :follow org-id-open) ("file+sys") ("file+emacs")
("shell" :follow org-link--open-shell)
("news" :follow
#[514 "\301\300\302Q\"\207" ["news" browse-url ":"] 6
"\n\n(fn URL ARG)"]
)
add automatically a counter to a header/TODO???
Hi
I am using a poor man's issue system
the org file in question has header of the form.
** WAIT \eqref{eq:section5-blowup:1} is referred as an item not an equation!
:PROPERTIES:
:ID: Issues
:Date: <2021-11-01 lun>
:STATUS: [ ]
:Is: 11
:END:
I was wondering whether
- I could automatically insert in the HEADER a counter like
** WAIT 1: \eqref{eq:section5-blowup:1} is referred as an item not
an equation
- or in the drawer like this
** WAIT \eqref{eq:section5-blowup:1} is referred as an item not an equation!
:PROPERTIES:
:ID: Issues
:Date: <2021-11-01 lun>
:STATUS: [ ]
:Is: automatically inserted
:END:
Regards
Uwe Brauer
Re: Re: Introducing Org-transclusion
Hi, it isn't part of gnu emacs currently.
Re: add automatically a counter to a header/TODO???
>>> "UB" == Uwe Brauer writes:
> Hi
> I am using a poor man's issue system
> the org file in question has header of the form.
> ** WAIT \eqref{eq:section5-blowup:1} is referred as an item not an equation!
>:PROPERTIES:
>:ID: Issues
>:Date: <2021-11-01 lun>
>:STATUS: [ ]
>:Is: 11
>:END:
> I was wondering whether
> - I could automatically insert in the HEADER a counter like
> ** WAIT 1: \eqref{eq:section5-blowup:1} is referred as an item not
> an equation
>- or in the drawer like this
> ** WAIT \eqref{eq:section5-blowup:1} is referred as an item not an equation!
>:PROPERTIES:
>:ID: Issues
>:Date: <2021-11-01 lun>
>:STATUS: [ ]
>:Is: automatically inserted
>:END:
I found an answer in
https://stackoverflow.com/questions/27937446/how-to-vote-for-a-heading-in-org-mode
Which works nicely although
(add-to-list 'org-speed-commands-user '("+" . (plusone)))
Is no longer valid, so I bound that function just to another key.
One question remains: is there any way to take the counter down?
(defun plusone ()
"Increase the VOTES property in an org-heading by one. Create
the property if needed."
(interactive)
(org-entry-put
(point)
"VOTES"
(format "%s" (+ 1 (string-to-number
(or
(org-entry-get (point) "VOTES")
"0"))
The genius in me, though
(format "%s" (- 1 (string-to-number
Would do that but it does not, strange,
smime.p7s
Description: S/MIME cryptographic signature
Re: Re: Introducing Org-transclusion
"Thomas Paulsen" writes: > Hi, > > it isn't part of gnu emacs currently. Yes, this is correct. Org-transclusion is only available on GitHub at the moment. With the advice from Ihor and others, I am in the process of sending the whole package as a patch to Org.
Re: Storing database credentials outside an org file
On 1/11/21 4:33 pm, Tim Cross wrote: Mike Gauland writes: I often use an org file to record database queries, using sql source blocks. I've been putting the database credentials in the file using header-args:sql properties, but I'd prefer to have the credentials saved in a separate file for security reasons. Any ideas on how I could make this work? It probably wouldn't be too hard to use the authinfo.gpg facility via the auth-source library which is included in Emacs. In fact, I think sql-mode might already have support for this built in. Thanks for the suggestion. I didn't see it on worg, but in ob-sql.el I found support for ":dbconnection". I can set up an entry in sql-connection-alist, and give the name of the entry to the sql block via :dbconnection. Now, my password is safely out of the .org file. As a bonus, it is easier to maintain across different org files.
Re: [BUG] after update to 9.5, starting org mode results in cache error messages [9.5 (9.5-gd4e192 @ c:/Users/scott/.emacs.d/straight/build/org/)]
On Mon, Nov 1, 2021 at 5:40 AM Ihor Radchenko wrote: > Thanks for reporting and providing the detailed backtrace! > Backtrace is really strange because cache is clearly updated upon > changing the file, but somehow somewhere a stale element is still > returned. > > Given that you are using org-roam, the only suspect that may create > stale copies of cached elements is org-element-parse-buffer. The > attached patch is making sure that org-element-parse-buffer never tries > to reuse cache. Can you try the patch and see if it helps? > Applying the patch doesn't seem to have completely fixed the issue. Here's an error message I got after re-starting running the patch, below. Before I go though, I thought it might be worth asking: how does one turn off the cache? I'd like to see if that resolves not only this issue, but also the fact that saving this 700 line file takes 15 seconds now. Thanks for your help, Greg --- error message below --- Warning (emacs): org-element--cache: Cached element has wrong parent in 211002_monthly.org. Resetting. If this warning appears regularly, please report it to Org mode mailing list (M-x org-submit-bug-report). The element is: "(headline (:raw-value \"Make sure Maia and I are on the same page regarding -- getting everything out of the attic and garage before Thursday!\" :begin 188 :end 315 :pre-blank 0 :contents-begin nil :contents-end nil :robust-begin nil :robust-end nil :level 2 :priority nil :tags nil :todo-keyword #(\"TODO\" 0 4 (face (org-todo org-todo org-level-2) wrap-prefix #(\"*** \" 0 1 ... 1 4 ...) line-prefix #(\"*\" 0 1 ...) fontified t)) :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 188 :title \"Make sure Maia and I are on the same page regarding -- getting everything out of the attic and garage before Thursday!\" :mode nil :granularity element :cached t :parent (org-data (:begin 1 :contents-begin 1 :contents-end 93756 :end 93756 :robust-begin 44 :robust-end 93754 :post-blank 0 :post-affiliated 1 :path \"/Users/greg/org/roam-personal/211002_monthly.org\" :mode org-data :ID \"211002_080654\" :CATEGORY \"211002_monthly\" :cached t :org-element--cache-sync-key nil)) :org-element--cache-sync-key (29 . 188)))" The parent is: "(org-data (:begin 1 :contents-begin 1 :contents-end 93756 :end 93756 :robust-begin 44 :robust-end 93754 :post-blank 0 :post-affiliated 1 :path \"/Users/greg/org/roam-personal/211002_monthly.org\" :mode org-data :ID \"211002_080654\" :CATEGORY \"211002_monthly\" :cached t :org-element--cache-sync-key nil))" The real parent is: "(headline (:raw-value \"Monday\" :begin 112 :end 424 :pre-blank 0 :contents-begin 121 :contents-end 424 :robust-begin 123 :robust-end 422 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 112 :title (#(\"Monday\" 0 6 (:parent #0))) :mode nil :granularity nil))"
Re: [BUG] after update to 9.5, starting org mode results in cache error messages [9.5 (9.5-gd4e192 @ c:/Users/scott/.emacs.d/straight/build/org/)]
Greg Coladonato writes: > Applying the patch doesn't seem to have completely fixed the issue. > Here's an error message I got after re-starting running the patch, below. Thanks! Is org-element--cache-self-verify still set to 'backtrace? I am not seeing any extra backtrace in the new warning. > Before I go though, I thought it might be worth asking: how does one turn > off the cache? I'd like to see if that resolves not only this issue, but > also the > fact that saving this 700 line file takes 15 seconds now. You can disable cache by setting org-element-use-cache to nil. However, it would be helpful if you run M-x profiler-start, save the buffer, run M-x profiler-report, save the report buffer, and post the report here. Best, Ihor
Re: [BUG] after update to 9.5, starting org mode results in cache error messages [9.5 (9.5-gd4e192 @ c:/Users/scott/.emacs.d/straight/build/org/)]
On Mon, Nov 1, 2021 at 9:03 PM Ihor Radchenko wrote: > Greg Coladonato writes: > > > Applying the patch doesn't seem to have completely fixed the issue. > > Here's an error message I got after re-starting running the patch, below. > > Thanks! Is org-element--cache-self-verify still set to 'backtrace? I am > not seeing any extra backtrace in the new warning. > Ahh, that setting was lost after one of my restarts. I've reset it in my config file and will report back next time the warning happens. > > Before I go though, I thought it might be worth asking: how does one turn > > off the cache? I'd like to see if that resolves not only this issue, but > > also the > > fact that saving this 700 line file takes 15 seconds now. > > You can disable cache by setting org-element-use-cache to nil. > However, it would be helpful if you run M-x profiler-start, save the > buffer, run M-x profiler-report, save the report buffer, and post the > report here. > Here's the report: [profiler-profile "24.3" cpu #s(hash-table size 325 test equal rehash-size 1.5 rehash-threshold 0.8125 data ([nil nil nil nil nil nil nil nil nil nil nil nil nil nil nil nil] 277 [file-truename file-truename file-truename file-truename "#" cl-some projectile-project-root let doom-project-root or cond let +doom-dashboard--get-pwd let if +doom-dashboard-update-pwd-h] 1 [doom-modeline-segment--buffer-encoding eval redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil nil nil nil nil] 1 [doom-modeline-segment--vcs eval format-mode-line doom-modeline-format--main eval redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil nil] 2 [org-insert-heading org-insert-todo-heading funcall-interactively call-interactively command-execute nil nil nil nil nil nil nil nil nil nil nil] 1 [replace-regexp-in-string org-trim let* save-excursion org-element-headline-parser cond setq let save-excursion org-element--current-element progn unwind-protect let* save-restriction save-excursion save-excursion] 1 [setcar if org-element-put-property progn if let* or org-element--cache-key org-element--cache-key-less-p not and cond let* while let save-current-buffer] 1 [progn if progn if let and or if if while let if let* org-element--cache-for-removal let if] 1 [let* progn if progn if while let if let* org-element--cache-for-removal let if let save-current-buffer org-element--cache-submit-request progn] 1 [run-with-idle-timer setq org-element--cache-set-timer progn if save-current-buffer progn if org-element--cache-after-change org-insert-todo-heading funcall-interactively call-interactively command-execute nil nil nil] 1 [font-lock-fontify-region "#" run-hook-wrapped jit-lock--run-functions jit-lock-fontify-now jit-lock-function redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil] 2 [doom-modeline-format--main eval redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil nil nil nil nil] 2 [let* progn if org-element--cache-process-request while catch let let if save-current-buffer progn if org-element--cache-sync apply timer-event-handler nil] 1 [progn if let save-excursion org-element--current-element setq if if while let let* save-restriction save-excursion progn unwind-protect let] 1 [or and org-element--cache-interrupt-p or if if if let* while let catch org-element--cache-process-request while catch let let] 2 [and let let while let let org-element--cache-shift-positions if if if let* while let catch org-element--cache-process-request while] 2 [regexp-opt-group regexp-opt-group regexp-opt-group regexp-opt sp--regexp-for-group apply "#" mapconcat sp--strict-regexp-opt sp--get-closing-regexp sp-insert-pair sp--post-self-insert-hook-handler self-insert-command org-self-insert-command funcall-interactively call-interactively] 1 [eval redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil nil nil nil nil nil] 1 [and while save-excursion let* cond org-element--object-lex setq and while let save-restriction save-excursion org-element--parse-objects if org-element-put-property let] 20 [sp--do-action-p sp--all-pairs-to-insert sp--pair-to-insert sp-escape-open-delimiter sp--post-self-insert-hook-handler self-insert-command org-self-insert-command funcall-interactively call-interactively command-execute nil nil nil nil nil nil] 1 [doom-modeline-segment--buffer-encoding eval format-mode-line doom-modeline-format--main eval redisplay_internal\ \(C\ function\) nil nil nil nil nil nil nil nil nil nil] 1 [timer--time-less-p timer--activate timer-activate-when-idle run-with-idle-timer setq org-element--cache-set-timer if let if save-current-buffer progn if org-element--cache-sync progn if if] 1 [sp--looking-back sp--looking-back-p sp-point-after-word-p sp--do-action-p sp--all-pairs-to-insert sp--pair-to-insert sp-insert-pair sp--post-self-insert-hook-handler self-insert-command org-self-insert-command funcall-interactively call-interactively command-execute nil nil nil] 1 [basic-save-buffer save-buffe
Re: Introducing Org-transclusion
Hi Noboru, > Org-transclusion is rather simple. It only requires Emacs 27.1 and Org 9.4. It’s worth noting that currently Org’s minimum supported Emacs version is 25. Do you use much from Emacs 26/27? There was mention of compat.el earlier though, and if that goes somewhere this may not be an issue. All the best, Timothy
Re: [BUG] after update to 9.5, starting org mode results in cache error messages [9.5 (9.5-gd4e192 @ c:/Users/scott/.emacs.d/straight/build/org/)]
Greg Coladonato writes: > Here's the report: > > [profiler-profile "24.3" cpu #s(hash-table size 325 test equal rehash-size > ... The profile shows that bottleneck is undo-fu-session. Even if org-element-cache is the cause, it should be some strange interaction with other external packages. org-element-cache itself does not change buffer text. If anything, the new code should change buffer text properties less than before because some of the older cache logic is moved from using text properties to using org-element-cache. Best, Ihor
