[ccp4bb] PhD position available at the RVZ Würzburg

[Florian Sauer]

Dear all,

the Group of Prof. Caroline Kisker at the Virchow Center, University of 
Würzburg, Germany has a fully funded PhD-position available.


In case you're interested, have a look here:

https://www.uni-wuerzburg.de/en/rvz/jobs-and-career/job-offers/


Best wishes,

Florian

--
Dr. Florian Sauer
Rudolf Virchow Zentrum für Experimentelle Biomedizin
Josef-Schneider-Str. 2, Haus D15
97080 Würzburg



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[ccp4bb] Phenix real space refine getting lost ...

[Klemens Wild]

Dear community

small problem running phenix.real_space_refine on a high resolution map 
via GUI (2.4 A, 2.05 GB) on a MacBook Pro 32 GB M1 ... Never encountered 
this before, but always used smaller maps:


Routine starts and job hangs upon extracting box (see attachment). 
Separate job on map runs when I do wrapping (thought it might be this), 
however, when I feed the GUI with this output, again nothing. Not sure 
what the problem is (no log file indication or error message): some grid 
things, unit cell issues, map too big?


Some input would be helpful, as I am stuck ...

Thx

Klemens




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smime.p7s
Description: S/MIME Cryptographic Signature

Re: [ccp4bb] Richard Pauptit, 1954-2024

[Patrick Shaw Stewart]

That's a good obituary, but I don't think it quite communicates how funny -
and quirky - Richard was.  I remember him once giving an introduction to an
invited speaker that went on for around 25 mins.  I know he had ambitions
to become a rock star in his 60s - did he also want to be a stand-up
comic?  The explanation was never given.


On Fri, Aug 2, 2024 at 2:18 PM Caitriona Dennis 
wrote:

> Dear colleagues,
>
> With sadness I convey news of the passing of Dr Richard Pauptit, formerly
> Astrazeneca, U.K.
>  Richard was well known in the protein crystallography field, a great
> scientist and inspiring teacher. Many of you will have encountered him at
> meetings, worked with him and enjoyed his hospitality. He was an active
> member of the CCP4 commitee.
> He retired from Astrazeneca in 2014 but still played a role in many
> projects.
> His obituary is published in ActaF
> https://doi.org/10.1107/S2053230X24007064
> 
> Richard Alexander Pauptit 1954–2024
> 
> Richard Pauptit is remembered.
> doi.org
>
>
> Cait Dennis
> Lecturer, HullYork Medical School, University of York, UK.
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>


-- 
 patr...@douglas.co.ukDouglas Instruments Ltd.
 Douglas House, East Garston, Hungerford, Berkshire, RG17 7HD, UK
 Directors: Patrick Shaw Stewart, Peter Baldock, Stefan Kolek

 http://www.douglas.co.uk
 Tel: 44 (0) 148-864-9090US toll-free 1-877-225-2034
 Regd. England 2177994, VAT Reg. GB 480 7371 36



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[ccp4bb] Maatel HC1c humidity controller available

[Jonathan Ruprecht]

Dear bulletin board members,

The MRC Mitochondrial Biology Unit in Cambridge, UK, has a Maatel HC1c 
humidity controller, together with the ancilliary components necessary 
to make a crystal dehydration rig, including a Nikon SMZ800 microscope, 
that is now surplus to our requirements and available free of charge 
(the new owner would be asked to pay for shipping).  This was purchased 
in 2010, last used in approximately 2017 and is thought to be a working 
system. Please direct any enquiries to David Pate, MBU Laboratory 
Manager, dd...@cam.ac.uk.


Best wishes,

Jonathan Ruprecht

--
Dr Jonathan Ruprecht

MRC Mitochondrial Biology Unit
University of Cambridge
Keith Peters Building
Cambridge Biomedical Campus
Hills Road
Cambridge
CB2 0XY



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Re: [ccp4bb] Phenix real space refine getting lost ...

[Jon Cooper]

A 2 gigabyte map is a very big one. Maybe it needs resampling or cropping down 
to something in the megabyte range. 

Best wishes, Jon Cooper.
jon.b.coo...@protonmail.com

Sent from Proton Mail Android


 Original Message 
On 07/08/2024 09:24, Klemens Wild  wrote:

>  Dear community
>  
>  small problem running phenix.real_space_refine on a high resolution map
>  via GUI (2.4 A, 2.05 GB) on a MacBook Pro 32 GB M1 ... Never encountered
>  this before, but always used smaller maps:
>  
>  Routine starts and job hangs upon extracting box (see attachment).
>  Separate job on map runs when I do wrapping (thought it might be this),
>  however, when I feed the GUI with this output, again nothing. Not sure
>  what the problem is (no log file indication or error message): some grid
>  things, unit cell issues, map too big?
>  
>  Some input would be helpful, as I am stuck ...
>  
>  Thx
>  
>  Klemens
>  
>  
>  
>  
>  To unsubscribe from the CCP4BB list, click the following link:
>  https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
>  
>  This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing 
> list hosted by www.jiscmail.ac.uk, terms & conditions are available at 
> https://www.jiscmail.ac.uk/policyandsecurity/
>



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