Re: [Bioc-devel] Change bioconductor maintainer

[CoreTeam Bioconductor]

In order for the maintainer email to change on the package landing pages,
you will need to update in the DESCRIPTION of your package on
git.bioconductor.org.  The GitCredentials app that manages package access
ssh keys is already using zl...@mdanderson.org.

Please see git help pages for pushing changes to release (RELEASE_3_14) and
devel (master) branches
http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/

On Mon, Nov 29, 2021 at 4:11 PM Li, Ziyi  wrote:

> Hello,
>
> I recently changed my institution and my email address. Could you update
> the maintainer email address of TOAST (
> https://bioconductor.org/packages/release/bioc/html/TOAST.html) to
> zl...@mdanderson.org?
>
>
> Thank you!
>
> Ziyi
>

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Re: [Bioc-devel] Repitools Bioconductor

[CoreTeam Bioconductor]

I just updated the email from  mark.robin...@imls.uzh.ch to
mark.robin...@mls.uzh.ch on the BiocCredentials app.  You should be able to
reset your password and add new ssh keys to allow push access to the
Repitools package.  Please reach out if you continue to have any issues.

Cheers,

On Sun, Mar 17, 2024 at 4:27 AM Mark D. Robinson 
wrote:

>
> Sorry for the delay; I have the fix for this problem now ..
>
> But my Bioc git account in a bit mangled because they recently shut off my
> mark.robin...@imls.uzh.ch account (I have literally no way to access it)
> in favour of this mark.robinson@mls account .. but unfortunately that is
> not the account that is attached to the BioC packages ..
>
> In particular, the @imls account is listed here:
> https://www.bioconductor.org/packages/release/bioc/html/Repitools.html
>
> When I try to register the new email address, I get:
>
> mark.robin...@mls.uzh.ch is not associated with a maintainer of a
> Bioconductor package. Please check the spelling or contact
> bioc-devel@r-project.org for help.
>
> Can someone sort me out, please?
>
> Thanks, Mark
>
>
> -
> Prof. Mark D. Robinson
> Statistical Bioinformatics DMLS+SIB
> https://robinsonlabuzh.github.io/
>
> On 13 Mar 2024, at 12:32, CoreTeam Bioconductor <
> bioconductorcoret...@gmail.com> wrote:
>
> Per the original email send:
>
> We would like to bring to your attention that your package is failing in
> devel across all platforms. This is very problematic. Please investigate
> the issues and fix the package to avoid deprecation.
>
> https://bioconductor.org/checkResults/devel/bioc-LATEST/
> <https://bioconductor.org/checkResults/3.17/workflows-LATEST/TCGAWorkflow>
>
> If you have further questions or concerns please reach out on the
> bioc-devel@r-project.org
>
> We appreciate your quick attention to this matter
>
> *The Ringo package that is missing was deprecated in Bioconductor 3.18 and
> removed in 3.19.  You will have to adjust your package to not depend on
> Ringo. *
>
> Cheers,
> On behalf of the Bioconductor Core Team
>
> On Wed, Mar 13, 2024 at 3:50 AM Mark D. Robinson 
> wrote:
>
>>
>> Right. Ringo is deprecated. I’ll try and figure out what we imported from
>> there ..
>>
>> Mark
>>
>>
>> -
>> Prof. Mark D. Robinson
>> Statistical Bioinformatics DMLS+SIB
>> https://robinsonlabuzh.github.io/
>>
>> On 13 Mar 2024, at 08:49, Mark Robinson  wrote:
>>
>>
>> I haven’t had a chance to look at it. When are the deadlines?
>>
>> The error seems to be:
>>
>> ERROR: dependency ‘Ringo’ is not available for package ‘Repitools’
>>
>> .. which is not actually a Repitools error.
>>
>> Mark
>>
>> -
>> Prof. Mark D. Robinson
>> Statistical Bioinformatics DMLS+SIB
>> https://robinsonlabuzh.github.io/
>>
>> On 12 Mar 2024, at 14:28, CoreTeam Bioconductor <
>> bioconductorcoret...@gmail.com> wrote:
>>
>> Hi Mark,
>>
>> I'm hoping you can give an update on Repitools?  The next release is fast
>> approaching and the package continues to fail.  I will be deprecating it
>> shortly if it is not fixed.
>>
>>
>> On Thu, Feb 29, 2024 at 12:19 PM CoreTeam Bioconductor <
>> bioconductorcoret...@gmail.com> wrote:
>>
>>> It has been over a month and the package continues to fail.  Can we
>>> expect updates soon or should we continue with deprecation of the package?
>>>
>>> On Tue, Jan 16, 2024 at 10:07 AM CoreTeam Bioconductor <
>>> bioconductorcoret...@gmail.com> wrote:
>>>
>>>> Please update yourself when you make changes to the package.  We use
>>>> whatever email is listed in the DESCRIPTION of the package.
>>>>
>>>> On Mon, Jan 15, 2024 at 3:30 AM Mark D. Robinson <
>>>> mark.robin...@mls.uzh.ch> wrote:
>>>>
>>>>> Dear BioC core team,
>>>>>
>>>>> Can you change my email address to mark.robin...@mls.uzh.ch (not
>>>>> @imls), please? .. then I will also try to deal with the Ringo dependency.
>>>>>
>>>>> Thanks!
>>>>>
>>>>> Best, Mark
>>>>>
>>>>> -----
>>>>> Prof. Mark D. Robinson
>>>>> Statistical Bioinformatics DMLS+SIB
>>>>> https://robinsonlabuzh.github.io/
>>>>>
>>>>> On 14 Jan 2024, at 20:55, Andrea Riebler 
>>>>> wrote:
>>>>>
>>>>> Dear Mark,
>>>>>
>>>

Re: [Bioc-devel] BayesSpace maintainership

[CoreTeam Bioconductor]

We will need to create a BiocChedentials account for edward130...@gmail.com?
Edward do you have a BIocCredentials account with a different email
address?  Also do you have a github id you would like associated?

On Tue, Oct 22, 2024 at 3:31 PM Matthew Stone 
wrote:

> Hi,
>
> Could I please transfer maintainership of BayesSpace
> 
> to Edward Zhao (cc'ed)?
>
> Thank you!
>
> Matt
>

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