I just updated the email from mark.robin...@imls.uzh.ch to mark.robin...@mls.uzh.ch on the BiocCredentials app. You should be able to reset your password and add new ssh keys to allow push access to the Repitools package. Please reach out if you continue to have any issues.
Cheers, On Sun, Mar 17, 2024 at 4:27 AM Mark D. Robinson <mark.robin...@mls.uzh.ch> wrote: > > Sorry for the delay; I have the fix for this problem now .. > > But my Bioc git account in a bit mangled because they recently shut off my > mark.robin...@imls.uzh.ch account (I have literally no way to access it) > in favour of this mark.robinson@mls account .. but unfortunately that is > not the account that is attached to the BioC packages .. > > In particular, the @imls account is listed here: > https://www.bioconductor.org/packages/release/bioc/html/Repitools.html > > When I try to register the new email address, I get: > > mark.robin...@mls.uzh.ch is not associated with a maintainer of a > Bioconductor package. Please check the spelling or contact > bioc-devel@r-project.org for help. > > Can someone sort me out, please? > > Thanks, Mark > > > ----- > Prof. Mark D. Robinson > Statistical Bioinformatics DMLS+SIB > https://robinsonlabuzh.github.io/ > > On 13 Mar 2024, at 12:32, CoreTeam Bioconductor < > bioconductorcoret...@gmail.com> wrote: > > Per the original email send: > > We would like to bring to your attention that your package is failing in > devel across all platforms. This is very problematic. Please investigate > the issues and fix the package to avoid deprecation. > > https://bioconductor.org/checkResults/devel/bioc-LATEST/ > <https://bioconductor.org/checkResults/3.17/workflows-LATEST/TCGAWorkflow> > > If you have further questions or concerns please reach out on the > bioc-devel@r-project.org > > We appreciate your quick attention to this matter > > *The Ringo package that is missing was deprecated in Bioconductor 3.18 and > removed in 3.19. You will have to adjust your package to not depend on > Ringo. * > > Cheers, > On behalf of the Bioconductor Core Team > > On Wed, Mar 13, 2024 at 3:50 AM Mark D. Robinson <mark.robin...@mls.uzh.ch> > wrote: > >> >> Right. Ringo is deprecated. I’ll try and figure out what we imported from >> there .. >> >> Mark >> >> >> ----- >> Prof. Mark D. Robinson >> Statistical Bioinformatics DMLS+SIB >> https://robinsonlabuzh.github.io/ >> >> On 13 Mar 2024, at 08:49, Mark Robinson <mark.robin...@mls.uzh.ch> wrote: >> >> >> I haven’t had a chance to look at it. When are the deadlines? >> >> The error seems to be: >> >> ERROR: dependency ‘Ringo’ is not available for package ‘Repitools’ >> >> .. which is not actually a Repitools error. >> >> Mark >> >> ----- >> Prof. Mark D. Robinson >> Statistical Bioinformatics DMLS+SIB >> https://robinsonlabuzh.github.io/ >> >> On 12 Mar 2024, at 14:28, CoreTeam Bioconductor < >> bioconductorcoret...@gmail.com> wrote: >> >> Hi Mark, >> >> I'm hoping you can give an update on Repitools? The next release is fast >> approaching and the package continues to fail. I will be deprecating it >> shortly if it is not fixed. >> >> >> On Thu, Feb 29, 2024 at 12:19 PM CoreTeam Bioconductor < >> bioconductorcoret...@gmail.com> wrote: >> >>> It has been over a month and the package continues to fail. Can we >>> expect updates soon or should we continue with deprecation of the package? >>> >>> On Tue, Jan 16, 2024 at 10:07 AM CoreTeam Bioconductor < >>> bioconductorcoret...@gmail.com> wrote: >>> >>>> Please update yourself when you make changes to the package. We use >>>> whatever email is listed in the DESCRIPTION of the package. >>>> >>>> On Mon, Jan 15, 2024 at 3:30 AM Mark D. Robinson < >>>> mark.robin...@mls.uzh.ch> wrote: >>>> >>>>> Dear BioC core team, >>>>> >>>>> Can you change my email address to mark.robin...@mls.uzh.ch (not >>>>> @imls), please? .. then I will also try to deal with the Ringo dependency. >>>>> >>>>> Thanks! >>>>> >>>>> Best, Mark >>>>> >>>>> ----- >>>>> Prof. Mark D. Robinson >>>>> Statistical Bioinformatics DMLS+SIB >>>>> https://robinsonlabuzh.github.io/ >>>>> >>>>> On 14 Jan 2024, at 20:55, Andrea Riebler <andrea.rieb...@ntnu.no> >>>>> wrote: >>>>> >>>>> Dear Mark, >>>>> >>>>> Happy new year and congratulations on being a full professor!!! 😊 That >>>>> is really great and well deserved. >>>>> >>>>> I hope you and your family are doing fine. Here, there is not so much >>>>> new. >>>>> >>>>> Probably you have already seen that there seems to be an issue with >>>>> Repitools. I attach you below an email I have received from Bioconductor. >>>>> >>>>> Maybe it works out to see you soon in person again 😊 >>>>> >>>>> Best wishes from Trondheim, >>>>> Andrea >>>>> >>>>> >>>>> *From: *CoreTeam Bioconductor <bioconductorcoret...@gmail.com> >>>>> *Date: *Friday, 12 January 2024 at 13:38 >>>>> *To: *Dario Strbenac <dario.strbe...@sydney.edu.au>, >>>>> a.stat...@garvan.org.au <a.stat...@garvan.org.au>, Andrea Riebler < >>>>> andrea.rieb...@ntnu.no> >>>>> *Subject: *Fwd: Repitools Bioconductor >>>>> >>>>> You are currently listed as an Author of the Repitools package. I >>>>> tried to send the following email to the listed maintainer of the >>>>> Repitools >>>>> package >>>>> Maintainer: Mark Robinson <mark.robin...@imls.uzh.ch> >>>>> But received an email address is not found. >>>>> If you still have contact with Mark Robinson could you please forward >>>>> and let him know your package is at risk for deprecation if the package is >>>>> not fix and if the maintainer email is not updated to a reachable address. >>>>> >>>>> >>>>> Thank you >>>>> On behalf of the Bioconductor Core Team >>>>> >>>>> >>>>> ---------- Forwarded message --------- >>>>> From: *CoreTeam Bioconductor* <bioconductorcoret...@gmail.com> >>>>> Date: Thu, Jan 11, 2024 at 9:36 AM >>>>> Subject: Repitools Bioconductor >>>>> To: <mark.robin...@imls.uzh.ch> >>>>> >>>>> >>>>> We would like to bring to your attention that your package is failing >>>>> in devel across all platforms. This is very problematic. Please >>>>> investigate >>>>> the issues and fix the package to avoid deprecation. >>>>> >>>>> https://bioconductor.org/checkResults/devel/bioc-LATEST/ >>>>> >>>>> If you have further questions or concerns please reach out on the >>>>> bioc-devel@r-project.org >>>>> >>>>> We appreciate your quick attention to this matter >>>>> >>>>> The Ringo package that is missing was deprecated in Bioconductor 3.18 >>>>> and removed in 3.19. You will have to adjust your package to not depend >>>>> on >>>>> Ringo. >>>>> >>>>> Cheers, >>>>> On behalf of the Bioconductor Core Team >>>>> >>>>> >>>>> >> >> > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
