Hi, Thanks for asking. It's a difficult area.
I'm not sure if such documentation would be considered a "manual" and if GNU FDL would be needed for it to be hosted on Savannah, or could it be licensed under GNU AGPL3 or later. I'm not sure if there's an explicit policy about autogenerated documentation. If FDL is needed, is there a GPL exception which could be used for the code with comments included into the documentation, or should I write a completely separated FDL-licensed manual instead? To avoid doubling the documentation burden, and yet allowing sharing the documentation with other FDL-using manuals (the goal for savannah), I recommend dual-licensing under both FDLv1.3+ and AGPLv3+. To do this, given that the doc sources are entwined with the source code, the easiest way I know of is to make a separate statement in the README (or some such) that the documentation parts of the sources are licensed under the GFDL. And the regular GFDL notice should be included in the generated documentation. Hope this helps, Karl