On Sat, Feb 11, 2023 at 8:33 PM David Kirkby <drkir...@gmail.com> wrote:
> On Saturday, 11 February 2023 at 13:39:52 UTC Dima Pasechnik wrote: > On Fri, Feb 10, 2023 at 9:10 PM David Kirkby <drki...@gmail.com> wrote: > It looks like sagemath_doc_html-none.is failing to build - full log of > that package only at > > https://www.kirkbymicrowave.co.uk/sagemath_doc_html-none.log > > This is the end of the logfile. > > Build finished. The built documents can be found in > /home/drkirkby/sage/local/share/doc/sage/inventory/en/reference/modfrm > [combinat ] no targets are out of date. > [combinat ] The inventory files are in > ../../local/share/doc/sage/inventory/en/reference/combinat. > Build finished. The built documents can be found in > /home/drkirkby/sage/local/share/doc/sage/inventory/en/reference/combinat > Error in glue(.Internal(R.home()), "library", "base", "R", "base", sep = > .Platform$file.sep) : > 4 arguments passed to .Internal(paste) which requires 3 > Error: could not find function "attach" > Error: object '.ArgsEnv' not found > Fatal error: unable to initialize the JIT > > Looks like > https://stackoverflow.com/questions/69903452/importing-rpy2-objects-gives-error-unable-to-initialize-the-jit > > I.e. apparently there is something amiss with R/rpy2 in your case. > > Could you provide the top-level config.log > along with logs/pkgs/rpy*.log > > We've switched to using system-wide install of R by default some time ago, > perhaps your R is too new for rpy2 we ship ? > > Dima > > Hi Dima, > > This is my R version > (base) drkirkby@canary:~/sage/logs/pkgs$ R --version > R version 4.2.2 (2022-10-31) -- "Innocent and Trusting" > > It's not an official Ubuntu version, which would be in /usr/bin > > (base) drkirkby@canary:~$ command -v R > /home/drkirkby/miniforge3/bin/R > Oh, you build in Conda... This might be a bit of a problem - it's not too well-tested for sure. Did you see https://doc.sagemath.org/html/en/installation/conda.html ? > > I did actually provide a link to the config.log before. > https://www.kirkbymicrowave.co.uk/config.log > as well as a compressed version of install.log > https://www.kirkbymicrowave.co.uk/install.log.bz2 > > Note I run make -j, so the log might look a bit messy, as it would have > used as many processes as it could to hopefully reduce the compilation > time. > > I've attached rpy2-3.4.5.log > > I did not actually intend to build a release candidate, but that's what I > got following the instructions. Is the norm now to put issues with release > candidates on sage-devel in future? I don''t know what the norm is now. > > As you may recall, my only involvement in Sage development was porting it > to Solaris. I'm an engineer, not a mathematician, and consider myself > relatively weak at maths. I'm now thinking of doing an Open University (OU) > maths degree > https://www.open.ac.uk/courses/maths/degrees/bsc-mathematics-q31 > just for something to do. Hence I thought I'd take a look at Sage again. > Unfortunately, at least on the statistics modules I would have to do, the > OU use Minitab. I'd much rather use the open-source R, but would not have > any say in the matter. I guess they think the can teach statistics quicker > with Minitab, as one does not have to do any programming. > > Dave > > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/4549ae99-e0d1-4ac1-9f6c-a6492471755dn%40googlegroups.com > <https://groups.google.com/d/msgid/sage-support/4549ae99-e0d1-4ac1-9f6c-a6492471755dn%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/CAAWYfq2OyMEHJ0YOwwBEMXach%2BJM%3DvrS1sTg-hpwTzM8aui%3D7g%40mail.gmail.com.
