On Fri, Feb 10, 2023 at 9:10 PM David Kirkby <drkir...@gmail.com> wrote:
> It looks like sagemath_doc_html-none.is failing to build - full log of > that package only at > > https://www.kirkbymicrowave.co.uk/sagemath_doc_html-none.log > > This is the end of the logfile. > > Build finished. The built documents can be found in > /home/drkirkby/sage/local/share/doc/sage/inventory/en/reference/modfrm > [combinat ] no targets are out of date. > [combinat ] The inventory files are in > ../../local/share/doc/sage/inventory/en/reference/combinat. > Build finished. The built documents can be found in > /home/drkirkby/sage/local/share/doc/sage/inventory/en/reference/combinat > Error in glue(.Internal(R.home()), "library", "base", "R", "base", sep = > .Platform$file.sep) : > 4 arguments passed to .Internal(paste) which requires 3 > Error: could not find function "attach" > Error: object '.ArgsEnv' not found > Fatal error: unable to initialize the JIT > Looks like https://stackoverflow.com/questions/69903452/importing-rpy2-objects-gives-error-unable-to-initialize-the-jit I.e. apparently there is something amiss with R/rpy2 in your case. Could you provide the top-level config.log along with logs/pkgs/rpy*.log We've switched to using system-wide install of R by default some time ago, perhaps your R is too new for rpy2 we ship ? Dima > make[4]: *** [Makefile:28: doc-inventory--reference-interfaces] Error 2 > make[3]: *** [Makefile:45: doc-inventory-reference] Error 2 > (base) drkirkby@canary:~/sage$ scp > /home/drkirkby/sage/logs/pkgs/sagemath_doc_html-none.log > k...@kirkbymicrowave.co.uk: > sagemath_doc_html-none.log > 100% 162KB 2.5MB/s > 00:00 > (base) drkirkby@canary:~/sage$ > > > On Friday, 10 February 2023 at 20:17:38 UTC David Kirkby wrote: > >> I got this rather weird error on Ubuntu 20.04. It says the following >> packages failed to build, but does not say what they were! The hardware is >> a Dell 7920 with 2 x 26 core CPUs and 384 GB RAM. >> >> I put config.log here >> https://www.kirkbymicrowave.co.uk/config.log >> >> and a compressed version of install.log here >> https://www.kirkbymicrowave.co.uk/install.log.bz2 >> >> >> make[3]: *** [Makefile:3262: >> /home/drkirkby/sage/local/var/lib/sage/installed/sagemath_doc_html-none] >> Error 2 >> make[2]: *** [Makefile:2766: all-start] Error 2 >> make[2]: Leaving directory '/home/drkirkby/sage/build/make' >> >> real 47m17.658s >> user 220m4.574s >> sys 14m6.540s >> >> ****************install.log.bz2*********************************************** >> Error building Sage. >> >> The following package(s) may have failed to build (not necessarily >> during this run of 'make all-start'): >> >> It is safe to delete any log files and build directories, but they >> contain information that is helpful for debugging build problems. >> WARNING: If you now run 'make' again, the build directory of the >> same version of the package will, by default, be deleted. Set the >> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> >> make[1]: *** [Makefile:40: all-start] Error 1 >> make[1]: Leaving directory '/home/drkirkby/sage' >> make: *** [Makefile:13: all] Error 2 >> >> *Trying to run the tests, it reports the following, which is not in the >> log file uploaded. * >> >> real 0m55.972s >> user 8m4.622s >> sys 0m47.623s >> *************************************************************** >> Error building Sage. >> >> The following package(s) may have failed to build (not necessarily >> during this run of 'make all-start'): >> >> * package: sagemath_doc_html-none >> last build time: Feb 10 20:12 >> log file: >> /home/drkirkby/sage/logs/pkgs/sagemath_doc_html-none.log >> >> It is safe to delete any log files and build directories, but they >> contain information that is helpful for debugging build problems. >> WARNING: If you now run 'make' again, the build directory of the >> same version of the package will, by default, be deleted. Set the >> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> >> make[1]: *** [Makefile:40: all-start] Error 1 >> make[1]: Leaving directory '/home/drkirkby/sage' >> make: *** [Makefile:13: all] Error 2 >> >> >> >> -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/03f57707-bed0-4214-8e2e-59a8ac500bf9n%40googlegroups.com > <https://groups.google.com/d/msgid/sage-support/03f57707-bed0-4214-8e2e-59a8ac500bf9n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. 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