High,
I upgraded gcc to 10.2.0 but that did not help. Regards Klaus -- Klaus Hackenberg IT-Systeme und Software-Integration IT.SERVICES Ruhr-Universität Bochum | 44780 Bochum fon: +49 234 32 23485 http://www.it-services.rub.de/ Von: sage-support@googlegroups.com <sage-support@googlegroups.com> Im Auftrag von Dima Pasechnik Gesendet: Sonntag, 7. März 2021 21:37 An: sage-support <sage-support@googlegroups.com> Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL 6 On Sun, 7 Mar 2021, 20:33 Matthias Koeppe, <matthiaskoe...@gmail.com <mailto:matthiaskoe...@gmail.com> > wrote: >From numpy.log: gcc: numpy/core/src/multiarray/flagsobject.c gcc: numpy/core/src/multiarray/nditer_api.c In file included from /net/dlp762/share/application-software/Gcc/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/immintrin.h:51, from numpy/core/src/umath/simd.inc.src:25, from numpy/core/src/umath/loops.c.src:50: /net/dlp762/share/application-software/Gcc/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/avxintrin.h:1194:1: error: inlining failed in call to always_inline '_mm256_movemask_ps': target specific option mismatch Try upgrading your compiler. I presume it is one of these very expensive and very non-standard HPC clusters, with some special soft that just can't be upgraded. Thank goodness it is not a Cray :-) On Saturday, March 6, 2021 at 10:35:39 AM UTC-8 klaus.ha...@ruhr-uni-bochum.de <mailto:klaus.ha...@ruhr-uni-bochum.de> wrote: High, I did a fresh start over: cd sage-9.2 make distclean ./configure --with-mp=gmp make mpir-clean make bzip2 xz pcre -j3 make -j8 But compilation still fails for numpy-1.19.1. I include config.log and error log. Regards, Klaus Hackenberg -- Klaus Hackenberg IT-Systeme und Software-Integration IT.SERVICES Ruhr-Universität Bochum | 44780 Bochum fon: +49 234 32 23485 <tel:+49%20234%203223485> http://www.it-services.rub.de/ -----Ursprüngliche Nachricht----- Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > Im Auftrag von Dima Pasechnik Gesendet: Samstag, 6. März 2021 16:13 An: sage-support <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL 6 On Sat, Mar 6, 2021 at 10:36 AM Dima Pasechnik <dim...@gmail.com <mailto:dim...@gmail.com> > wrote: > > why did you run ./configure with the option "--with-blas=openblas" ? > > Please try re-running ./configure without it. > > Then hopefully numpy etc will be built. Sorry, that was wrong. It's probably your new Python interfering. Start from scratch make distclean ./configure --with-mp=gmp I suppose it will pick up your newly installed Python3 and use it, you can check config.log for this, or just the output of ./configure > > > > On Sat, 6 Mar 2021, 09:55 'Hackenberg, Klaus' via sage-support, > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > wrote: >> >> High, >> >> running "make toolchain shows only >> >> [lsf@dlp762 sage-9.2]$ make toolchain make build/make/Makefile --stop >> make[1]: Entering directory >> `/net/dlp762/share/application-software/Sage/sage-9.2' >> make[1]: `build/make/Makefile' is up to date. >> make[1]: Leaving directory >> `/net/dlp762/share/application-software/Sage/sage-9.2' >> build/bin/sage-logger \ >> "cd build/make && ./install 'toolchain'" >> logs/install.log >> make[1]: Entering directory >> `/net/dlp762/share/application-software/Sage/sage-9.2/build/make' >> make[1]: Leaving directory >> `/net/dlp762/share/application-software/Sage/sage-9.2/build/make' >> Nothing to (re)build / all up-to-date. >> [lsf@dlp762 sage-9.2]$ >> >> I include the config log. >> >> Regards, Klaus Hackenberg >> >> -- >> Klaus Hackenberg >> IT-Systeme und Software-Integration >> IT.SERVICES >> Ruhr-Universität Bochum | 44780 Bochum >> fon: +49 234 32 23485 <tel:+49%20234%203223485> >> http://www.it-services.rub.de/ >> >> -----Ursprüngliche Nachricht----- >> Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > Im >> Auftrag von Dima Pasechnik >> Gesendet: Samstag, 6. März 2021 01:08 >> An: sage-support <sage-s...@googlegroups.com >> <mailto:sage-s...@googlegroups.com> >; Matthias Koeppe >> <mko...@math.ucdavis.edu <mailto:mko...@math.ucdavis.edu> > >> Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL 6 >> >> "Error building wheel for numpy" >> >> please post >> /net/dlp762/share/application-software/Sage/sage-9.2/config.log >> >> could you also please try running >> >> make toolchain >> >> and then run make. >> >> >> >> Matthias, >> is it another instance of not having .pc files ready for blas/lapack etc? >> >> Running from numpy source directory. >> /net/dlp762/share/application-software/Sage/sage-9.2/local/var/tmp/sage/build/numpy-1.19.1/src/numpy/distutils/system_info.py:1914: >> >> UserWarning: >> Optimized (vendor) Blas libraries are not found. >> Falls back to netlib Blas library which has worse performance. >> A better performance should be easily gained by switching >> Blas library. >> if self._calc_info(blas): >> /net/dlp762/share/application-software/Sage/sage-9.2/local/lib/python3.8/distutils/dist.py:274: >> >> UserWarning: Unknown distribution option: 'define_macros' >> warnings.warn(msg) >> error: Command "gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g >> -fwrapv -O3 -Wall -Wno-unused -fPIC -DNPY_INTERNAL_BUILD=1 >> -DHAVE_NPY_CONFIG_H=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 >> -D_LARGEFILE64_SOURCE=1 -DNO_ATLAS_INFO=1 -DHAVE_CBLAS >> -I/net/dlp762/share/application-software/Sage/sage-9.2/local/include >> -Ibuild/src.linux-x86_64-3.8/numpy/core/src/umath >> -Ibuild/src.linux-x86_64-3.8/numpy/core/src/npymath >> -Ibuild/src.linux-x86_64-3.8/numpy/core/src/common >> -Inumpy/core/include >> -Ibuild/src.linux-x86_64-3.8/numpy/core/include/numpy >> -Inumpy/core/src/common -Inumpy/core/src -Inumpy/core >> -Inumpy/core/src/npymath -Inumpy/core/src/multiarray >> -Inumpy/core/src/umath -Inumpy/core/src/npysort >> -I/net/dlp762/share/application-software/Sage/sage-9.2/local/include/ >> python3.8 -Ibuild/src.linux-x86_64-3.8/numpy/core/src/common >> -Ibuild/src.linux-x86_64-3.8/numpy/core/src/npymath -c >> build/src.linux-x86_64-3.8/numpy/core/src/umath/loops.c -o >> build/temp.linux-x86_64-3.8/build/src.linux-x86_64-3.8/numpy/core/src >> /umath/loops.o -MMD -MF >> build/temp.linux-x86_64-3.8/build/src.linux-x86_64-3.8/numpy/core/src >> /umath/loops.o.d >> -std=c99" failed with exit status 1 >> ********************************************************************* >> *********** >> Error building wheel for numpy >> ********************************************************************* >> *********** >> >> On Fri, Mar 5, 2021 at 5:37 PM 'Hackenberg, Klaus' via sage-support >> <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > wrote: >> > >> > High, >> > >> > >> > >> > I succeeded compiling r-3.6.3. >> > >> > >> > >> > But now next stop when compiling numpy-1.19.1. >> > >> > I include the error log. >> > >> > >> > >> > Regards, Klaus Hackenberg >> > >> > >> > >> > -- >> > >> > Klaus Hackenberg >> > >> > IT-Systeme und Software-Integration >> > >> > IT.SERVICES >> > >> > Ruhr-Universität Bochum | 44780 Bochum >> > >> > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > >> > http://www.it-services.rub.de/ >> > >> > >> > >> > Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > >> > Im Auftrag von Dima Pasechnik >> > Gesendet: Freitag, 5. März 2021 18:00 >> > An: sage-support <sage-s...@googlegroups.com >> > <mailto:sage-s...@googlegroups.com> > >> > Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL 6 >> > >> > >> > >> > make xz >> > >> > >> > >> > followed by make >> > >> > >> > >> > On Fri, 5 Mar 2021, 16:58 'Hackenberg, Klaus' via sage-support, >> > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > wrote: >> > >> > High, >> > >> > >> > >> > „make bzip2“ helps further, but r-3.6.3 still does not compile. >> > >> > RHEL6 contains >> > >> > >> > >> > [root@dlp762 Sage]# rpm -qa --last|grep xz >> > >> > xz-devel-4.999.9-0.5.beta.20091007git.el6.x86_64 Tue Jun 18 >> > 11:06:45 >> > 2019 >> > >> > xz-lzma-compat-4.999.9-0.5.beta.20091007git.el6.x86_64 Fri Sep 18 >> > 09:39:37 2015 >> > >> > xz-4.999.9-0.5.beta.20091007git.el6.x86_64 Fri Sep 18 09:39:26 2015 >> > >> > xz-libs-4.999.9-0.5.beta.20091007git.el6.x86_64 Fri Sep 18 09:39:03 >> > 2015 >> > >> > >> > >> > but 5.0.3 seems tob e necessary >> > >> > >> > >> > checking if lzma version >= 5.0.3... no >> > >> > configure: error: "liblzma library and headers are required" >> > >> > >> > >> > Is there a suitable version within sage? >> > >> > >> > >> > I include the error log. >> > >> > >> > >> > Regards, Klaus Hackenberg >> > >> > >> > >> > -- >> > >> > Klaus Hackenberg >> > >> > IT-Systeme und Software-Integration >> > >> > IT.SERVICES >> > >> > Ruhr-Universität Bochum | 44780 Bochum >> > >> > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > >> > http://www.it-services.rub.de/ >> > >> > >> > >> > Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > >> > Im Auftrag von Dima Pasechnik >> > Gesendet: Freitag, 5. März 2021 17:30 >> > An: sage-support <sage-s...@googlegroups.com >> > <mailto:sage-s...@googlegroups.com> > >> > Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL 6 >> > >> > >> > >> > >> > >> > On Fri, 5 Mar 2021, 16:17 'Hackenberg, Klaus' via sage-support, >> > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > wrote: >> > >> > High, >> > >> > adding /usr/local/Gcc/lib64 to $LD_LIBRARY_PATH helps compiling >> > gfan-0.6.2.p1. >> > >> > Next problem is with r-3.6.3: >> > The bzip2 from RHEL6 seem to be to old: >> > >> > [root@dlp762 Sage]# bzip2 --version bzip2, a block-sorting file >> > compressor. Version 1.0.5, 10-Dec-2007. >> > >> > Is there any option to use another version (built within sage)? >> > >> > >> > >> > make bzip2 >> > >> > >> > >> > >> > >> > >> > I include the error log. >> > >> > Regards, Klaus Hackenberg >> > >> > -- >> > Klaus Hackenberg >> > IT-Systeme und Software-Integration IT.SERVICES Ruhr-Universität >> > Bochum | 44780 Bochum >> > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > http://www.it-services.rub.de/ >> > >> > >> > -----Ursprüngliche Nachricht----- >> > Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > >> > Im Auftrag von Dima Pasechnik >> > Gesendet: Freitag, 5. März 2021 15:58 >> > An: sage-support <sage-s...@googlegroups.com >> > <mailto:sage-s...@googlegroups.com> > >> > Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL 6 >> > >> > On Fri, Mar 5, 2021 at 2:30 PM 'Hackenberg, Klaus' via sage-support >> > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > wrote: >> > > >> > > High, >> > > >> > > I find the following >> > > >> > > [lsf@dlp762 Sage]$ echo $PATH >> > > /usr/local/Gcc/bin:/usr/lib64/qt-3.3/bin:/usr/local/sbin:/usr/loc >> > > al/ bi n:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin >> > > [lsf@dlp762 Sage]$ >> > > [lsf@dlp762 Sage]$ g++ -v >> > > Using built-in specs. >> > > COLLECT_GCC=g++ >> > > COLLECT_LTO_WRAPPER=/net/dlp762/share/application-software/Gcc/bin/. >> > > ./ libexec/gcc/x86_64-pc-linux-gnu/9.2.0/lto-wrapper >> > > Target: x86_64-pc-linux-gnu >> > > Configured with: ../gcc-9.2.0/configure --disable-multilib >> > > --exec-prefix=/usr/local/Gcc --prefix=/usr/local/Gcc Thread model: >> > > posix gcc version 9.2.0 (GCC) >> > > [lsf@dlp762 Sage]$ >> > > [lsf@dlp762 Sage]$ find /usr/local/Gcc/ -name libstdc++.so.6 >> > > /usr/local/Gcc/lib64/libstdc++.so.6 >> > > /usr/local/Gcc/gcc-build/stage1-x86_64-pc-linux-gnu/libstdc++-v3/src/. >> > > libs/libstdc++.so.6 >> > > /usr/local/Gcc/gcc-build/x86_64-pc-linux-gnu/libstdc++-v3/src/.li >> > > bs/ >> > > li >> > > bstdc++.so.6 >> > > /usr/local/Gcc/gcc-build/prev-x86_64-pc-linux-gnu/libstdc++-v3/src/. >> > > li >> > > bs/libstdc++.so.6 >> > > [lsf@dlp762 Sage]$ >> > >> > try >> > >> > export LD_LIBRARY_PATH=/usr/local/Gcc/lib64:$LD_LIBRARY_PATH >> > >> > and then run make >> > >> > >> > >> > >> > > >> > > Regards, Klaus Hackenberg >> > > >> > > -- >> > > Klaus Hackenberg >> > > IT-Systeme und Software-Integration IT.SERVICES Ruhr-Universität >> > > Bochum | 44780 Bochum >> > > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > > http://www.it-services.rub.de/ >> > > >> > > >> > > -----Ursprüngliche Nachricht----- >> > > Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > Im >> > > Auftrag von Dima Pasechnik >> > > Gesendet: Freitag, 5. März 2021 15:08 >> > > An: sage-support <sage-s...@googlegroups.com >> > > <mailto:sage-s...@googlegroups.com> > >> > > Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL 6 >> > > >> > > On Fri, Mar 5, 2021 at 12:55 PM 'Hackenberg, Klaus' via sage-support >> > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > wrote: >> > > > >> > > > High, >> > > > >> > > > when using "./configure --with-mp=gmp" things look much better. >> > > > >> > > > But now I get an error for gfan-0.6.2.p1. >> > > > I include the error log. >> > > it says >> > > >> > > ./gfan: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not >> > > found (required by ./gfan) >> > > ./gfan: /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.8' not >> > > found (required by ./gfan) >> > > ./gfan: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.26' not >> > > found (required by ./gfan) >> > > ./gfan: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not >> > > found (required by ./gfan) >> > > ./gfan: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.22' not >> > > found (required by ./gfan) >> > > ./gfan: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not >> > > found (required by ./gfan) >> > > >> > > Something is not quite right with your C++ toolchain. As your >> > > gcc/g++ data says --prefix=/usr/local/Gcc one would expect >> > > libstdc++.so.6 to be in /usr/local/Gcc, and not in /usr/lib64/ >> > > (where you probably have old RHEL 6 gcc/g++ things) >> > > >> > > No idea what exactly. What is the output of >> > > >> > > g++ -v >> > > >> > > Do you have libstdc++.so.6 in /usr/local/ at all? >> > > >> > > >> > > >> > > > >> > > > Regards, Klaus Hackenberg >> > > > >> > > > -- >> > > > Klaus Hackenberg >> > > > IT-Systeme und Software-Integration IT.SERVICES >> > > > Ruhr-Universität Bochum | 44780 Bochum >> > > > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > > > http://www.it-services.rub.de/ >> > > > >> > > > >> > > > -----Ursprüngliche Nachricht----- >> > > > Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > Im >> > > > Auftrag von Dima Pasechnik >> > > > Gesendet: Freitag, 5. März 2021 12:45 >> > > > An: sage-support <sage-s...@googlegroups.com >> > > > <mailto:sage-s...@googlegroups.com> > >> > > > Betreff: Re: [sage-support] problem compiling sage 9.2 on RHEL >> > > > 6 >> > > > >> > > > On Fri, Mar 5, 2021 at 11:24 AM 'Hackenberg, Klaus' via sage-support >> > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > >> > > > wrote: >> > > > > >> > > > > High, >> > > > > >> > > > > I did the following >> > > > > >> > > > > [lsf@dlp762 Sage]$ cd sage-9.2 >> > > > > [lsf@dlp762 sage-9.2]$ ./configure --with-gmp=gmp > >> > > > > /tmp/configure.log 2>&1 >> > > > >> > > > and so you once again mixed up --with-gmp= and --with-mp= >> > > > >> > > > It should be --with-mp=gmp >> > > > >> > > > >> > > > > [lsf@dlp762 sage-9.2]$ make mpir-clean > /tmp/mpir.clean.log >> > > > > 2>&1 >> > > > > >> > > > > and include the logs. >> > > > > >> > > > > Regards, Klaus Hackenberg >> > > > > >> > > > > -- >> > > > > Klaus Hackenberg >> > > > > IT-Systeme und Software-Integration IT.SERVICES >> > > > > Ruhr-Universität Bochum | 44780 Bochum >> > > > > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > > > > http://www.it-services.rub.de/ >> > > > > >> > > > > >> > > > > -----Ursprüngliche Nachricht----- >> > > > > Von: sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > Im >> > > > > Auftrag von Dima Pasechnik >> > > > > Gesendet: Freitag, 5. März 2021 11:31 >> > > > > An: sage-support <sage-s...@googlegroups.com >> > > > > <mailto:sage-s...@googlegroups.com> > >> > > > > Betreff: Re: [sage-support] problem compiling sage 9.2 on >> > > > > RHEL 6 >> > > > > >> > > > > On Fri, Mar 5, 2021 at 10:02 AM 'Hackenberg, Klaus' via sage-support >> > > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > >> > > > > wrote: >> > > > > > >> > > > > > High, >> > > > > > >> > > > > > I installed python 3.9.2 in /usr/local/Python and added >> > > > > > it to PATH variable >> > > > > > >> > > > > > [lsf@dlp762 root]$ echo $PATH >> > > > > > /usr/local/Python/bin:/usr/lib64/qt-3.3/bin:/usr/local/sbin >> > > > > > :/u sr /l oc al >> > > > > > /bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin >> > > > > > [lsf@dlp762 root]$ python --version Python 3.9.2 >> > > > > > >> > > > > > Now symmetrica-3.0.1. compiles successfull. >> > > > > > But ppl-1.2 no longer compiles !!! >> > > > > > So I seem to be in a deadlock . >> > > > > > >> > > > > It's the same misconfiguration of mp/gmp stuff as before. >> > > > > Without knowning what exactly you did after changing PATH, it's hard >> > > > > to tell. >> > > > > >> > > > > please post the top level config.log (the one in the same >> > > > > directory as the main ./configure script) >> > > > > - the ppl problems come from the top level misconfiguration. >> > > > > >> > > > > >> > > > > >> > > > > > I include ppl error logs. >> > > > > > >> > > > > > Regards, Klaus Hackenberg >> > > > > > >> > > > > > -- >> > > > > > Klaus Hackenberg >> > > > > > IT-Systeme und Software-Integration IT.SERVICES >> > > > > > Ruhr-Universität Bochum | 44780 Bochum >> > > > > > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > > > > > http://www.it-services.rub.de/ >> > > > > > >> > > > > > >> > > > > > -----Ursprüngliche Nachricht----- >> > > > > > Von: sage-s...@googlegroups.com >> > > > > > <mailto:sage-s...@googlegroups.com> >> > > > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> > >> > > > > > Im Auftrag von Dima >> > > > > > Pasechnik >> > > > > > Gesendet: Donnerstag, 4. März 2021 18:53 >> > > > > > An: sage-support <sage-s...@googlegroups.com >> > > > > > <mailto:sage-s...@googlegroups.com> > >> > > > > > Betreff: Re: [sage-support] problem compiling sage 9.2 on >> > > > > > RHEL >> > > > > > 6 >> > > > > > >> > > > > > On Thu, Mar 4, 2021 at 5:08 PM 'Hackenberg, Klaus' via >> > > > > > sage-support <sage-s...@googlegroups.com >> > > > > > <mailto:sage-s...@googlegroups.com> > wrote: >> > > > > > > >> > > > > > > High, >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > on my RHEL6 server I see >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > [root@dlp762 Sage]# python --version >> > > > > > > >> > > > > > > Python 2.6.6 >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > But the server has installed xz packages >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > [root@dlp762 Sage]# rpm -qa --last|grep xz >> > > > > > > >> > > > > > > xz-devel-4.999.9-0.5.beta.20091007git.el6.x86_64 Tue Jun >> > > > > > > 18 >> > > > > > > 11:06:45 >> > > > > > > 2019 >> > > > > > > >> > > > > > > xz-lzma-compat-4.999.9-0.5.beta.20091007git.el6.x86_64 >> > > > > > > Fri Sep >> > > > > > > 18 >> > > > > > > 09:39:37 2015 >> > > > > > > >> > > > > > > xz-4.999.9-0.5.beta.20091007git.el6.x86_64 Fri Sep 18 09:39:26 >> > > > > > > 2015 >> > > > > > > >> > > > > > > xz-libs-4.999.9-0.5.beta.20091007git.el6.x86_64 Fri Sep >> > > > > > > 18 >> > > > > > > 09:39:03 >> > > > > > > 2015 >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > Is it possible to use the buildin xz ? >> > > > > > >> > > > > > Do you have xz application installed and accepted by Sage >> > > > > > (it should be visible in config.log)? If so, something is >> > > > > > breaking in >> > > > > > https://github.com/sagemath/sage/blob/master/build/sage_boo >> > > > > > tst >> > > > > > ra >> > > > > > p/ >> > > > > > un >> > > > > > co >> > > > > > mpress/tar_file.py#L161 >> > > > > > >> > > > > > Mind you, python 2.6.6 has been released about 12 years >> > > > > > ago, not sure this code, from 2016, was ever tested on >> > > > > > 2.6.6 (perhaps on less buggy >> > > > > > 2.6.7...) >> > > > > > >> > > > > > You may try installing pyenv with newer python and run Sage >> > > > > > installation from there. See >> > > > > > https://gist.github.com/ysaotome/7956676 >> > > > > > (you ought to replace 2.7.6 with 3.9.1 there, to escape the >> > > > > > Python2 hell completely) >> > > > > > >> > > > > > >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > Regards, Klaus Hackenberg >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > -- >> > > > > > > >> > > > > > > Klaus Hackenberg >> > > > > > > >> > > > > > > IT-Systeme und Software-Integration >> > > > > > > >> > > > > > > IT.SERVICES >> > > > > > > >> > > > > > > Ruhr-Universität Bochum | 44780 Bochum >> > > > > > > >> > > > > > > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > > > > > > >> > > > > > > http://www.it-services.rub.de/ >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > Von: sage-s...@googlegroups.com >> > > > > > > <mailto:sage-s...@googlegroups.com> >> > > > > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > > > > > > > Im Auftrag von Dima >> > > > > > > Pasechnik >> > > > > > > Gesendet: Donnerstag, 4. März 2021 17:18 >> > > > > > > An: sage-support <sage-s...@googlegroups.com >> > > > > > > <mailto:sage-s...@googlegroups.com> > >> > > > > > > Betreff: Re: [sage-support] problem compiling sage 9.2 on >> > > > > > > RHEL >> > > > > > > 6 >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > your system python cannot uncompress .xz files... :( >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > how old is it? >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > can you install systemwide python2 to be python 2.7? >> > > > > > > >> > > > > > > >> > > > > > > >> > > > > > > On Thu, 4 Mar 2021, 16:04 'Hackenberg, Klaus' via sage-support, >> > > > > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > > > > > > > wrote: >> > > > > > > >> > > > > > > High, >> > > > > > > >> > > > > > > I startet in a fresh directory sage-9.2 (from sage-9.2.tag.gz) >> > > > > > > using the command " make mpir-clean" and got >> > > > > > > >> > > > > > > ========================================================= >> > > > > > > === >> > > > > > > == >> > > > > > > == >> > > > > > > == >> > > > > > > == >> > > > > > > == >> > > > > > > === >> > > > > > > [lsf@dlp762 sage-9.2]$ make mpir-clean make >> > > > > > > build/make/Makefile --stop >> > > > > > > make[1]: Entering directory >> > > > > > > `/net/dlp762/share/application-software/Sage/sage-9.2' >> > > > > > > rm -f config.log >> > > > > > > mkdir -p logs/pkgs >> > > > > > > ln -s logs/pkgs/config.log config.log >> > > > > > > ********************************************************* >> > > > > > > *** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ****** >> > > > > > > error: Sage source tree is unconfigured. Please run >> > > > > > > "./configure" first. >> > > > > > > note: Type "./configure --help" to see the available >> > > > > > > configuration options. >> > > > > > > ********************************************************* >> > > > > > > *** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ** >> > > > > > > ****** >> > > > > > > make[1]: *** [build/make/Makefile] Error 1 >> > > > > > > make[1]: Leaving directory >> > > > > > > `/net/dlp762/share/application-software/Sage/sage-9.2' >> > > > > > > make: *** [mpir-clean] Error 2 >> > > > > > > [lsf@dlp762 sage-9.2]$ >> > > > > > > ========================================================= >> > > > > > > === >> > > > > > > == >> > > > > > > == >> > > > > > > == >> > > > > > > == >> > > > > > > == >> > > > > > > === >> > > > > > > >> > > > > > > I then used >> > > > > > > >> > > > > > > ./configure --with-mp=gmp make mpir-clean make -j4 >> > > > > > > >> > > > > > > and ppl-1.2 compiled ! >> > > > > > > >> > > > > > > But now I get a new error with symmetrica-3.0.1. >> > > > > > > I attach the error log file >> > > > > > > >> > > > > > > Regards, Klaus Hackenberg >> > > > > > > >> > > > > > > -- >> > > > > > > Klaus Hackenberg >> > > > > > > IT-Systeme und Software-Integration IT.SERVICES >> > > > > > > Ruhr-Universität Bochum | 44780 Bochum >> > > > > > > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > > > > > > http://www.it-services.rub.de/ >> > > > > > > >> > > > > > > >> > > > > > > -----Ursprüngliche Nachricht----- >> > > > > > > Von: sage-s...@googlegroups.com >> > > > > > > <mailto:sage-s...@googlegroups.com> >> > > > > > > <sage-s...@googlegroups.com <mailto:sage-s...@googlegroups.com> >> > > > > > > > Im Auftrag von Dima >> > > > > > > Pasechnik >> > > > > > > Gesendet: Donnerstag, 4. März 2021 15:57 >> > > > > > > An: sage-support <sage-s...@googlegroups.com >> > > > > > > <mailto:sage-s...@googlegroups.com> > >> > > > > > > Betreff: Re: [sage-support] problem compiling sage 9.2 on >> > > > > > > RHEL >> > > > > > > 6 >> > > > > > > >> > > > > > > Please post the top-level config.log, then we'll see more >> > > > > > > details about GMP. >> > > > > > > >> > > > > > > In Sage 9.2, if you do ./configure without arguments, Sage is >> > > > > > > building a GMP-compatible MPIR, not "real" GMP. >> > > > > > > (Perhaps MPIR is broken now beyond repair, and shoud not >> > > > > > > be used on RHEL 6,I don't know) We're changing with in >> > > > > > > the coming 9.3, see >> > > > > > > https://trac.sagemath.org/ticket/30752 >> > > > > > > Meanwhile please do >> > > > > > > >> > > > > > > make mpir-clean >> > > > > > > ./configure --with-mp=gmp make -j4 >> > > > > > > >> > > > > > > >> > > > > > > On Thu, Mar 4, 2021 at 2:06 PM 'Hackenberg, Klaus' via >> > > > > > > sage-support <sage-s...@googlegroups.com >> > > > > > > <mailto:sage-s...@googlegroups.com> > wrote: >> > > > > > > > >> > > > > > > > High, >> > > > > > > > >> > > > > > > > I startet in a fresh directory sage-9.2 (from sage-9.2.tag.gz) >> > > > > > > > using the commands >> > > > > > > > >> > > > > > > > ./configure >> > > > > > > > make -j4 >> > > > > > > > >> > > > > > > > and ran into the same error. >> > > > > > > > >> > > > > > > > gmp binaries are build automatically >> > > > > > > > >> > > > > > > > ls -lrt sage-9.2/local/lib/*gmp* -rwxr-xr-x 1 lsf lsf >> > > > > > > > 3342817 Mar 4 12:35 sage-9.2/local/lib/libgmp.so.23.0.3 >> > > > > > > > lrwxrwxrwx 1 lsf lsf 16 Mar 4 12:35 >> > > > > > > > sage-9.2/local/lib/libgmp.so.23 -> libgmp.so.23.0.3 >> > > > > > > > lrwxrwxrwx 1 lsf lsf 16 Mar 4 12:35 >> > > > > > > > sage-9.2/local/lib/libgmp.so -> libgmp.so.23.0.3 >> > > > > > > > -rwxr-xr-x 1 lsf lsf 318950 Mar 4 12:36 >> > > > > > > > sage-9.2/local/lib/libgmpxx.so.8.4.3 >> > > > > > > > lrwxrwxrwx 1 lsf lsf 17 Mar 4 12:36 >> > > > > > > > sage-9.2/local/lib/libgmpxx.so.8 -> libgmpxx.so.8.4.3 >> > > > > > > > lrwxrwxrwx 1 lsf lsf 17 Mar 4 12:36 >> > > > > > > > sage-9.2/local/lib/libgmpxx.so -> libgmpxx.so.8.4.3 >> > > > > > > > -rw-r--r-- 1 lsf lsf 6804714 Mar 4 12:36 >> > > > > > > > sage-9.2/local/lib/libgmp.a >> > > > > > > > -rw-r--r-- 1 lsf lsf 796188 Mar 4 12:36 >> > > > > > > > sage-9.2/local/lib/libgmpxx.a -rwxr-xr-x 1 lsf lsf 955210 Mar >> > > > > > > > 4 12:43 sage-9.2/local/lib/libcddgmp.so.0.0.0 >> > > > > > > > lrwxrwxrwx 1 lsf lsf 18 Mar 4 12:43 >> > > > > > > > sage-9.2/local/lib/libcddgmp.so.0 -> libcddgmp.so.0.0.0 >> > > > > > > > lrwxrwxrwx 1 lsf lsf 18 Mar 4 12:43 >> > > > > > > > sage-9.2/local/lib/libcddgmp.so -> libcddgmp.so.0.0.0 >> > > > > > > > -rw-r--r-- 1 lsf lsf 1532644 Mar 4 12:43 >> > > > > > > > sage-9.2/local/lib/libcddgmp.a >> > > > > > > > >> > > > > > > > I attach the error log file. >> > > > > > > > >> > > > > > > > Regards, Klaus Hackenberg >> > > > > > > > >> > > > > > > > -- >> > > > > > > > Klaus Hackenberg >> > > > > > > > IT-Systeme und Software-Integration IT.SERVICES >> > > > > > > > Ruhr-Universität Bochum | 44780 Bochum >> > > > > > > > fon: +49 234 32 23485 <tel:+49%20234%203223485> >> > > > > > > > http://www.it-services.rub.de/ >> > > > > > > > >> > > > > > > > >> > > > > > > > -----Ursprüngliche Nachricht----- >> > > > > > > > Von: sage-s...@googlegroups.com >> > > > > > > > <mailto:sage-s...@googlegroups.com> >> > > > > > > > <sage-s...@googlegroups.com >> > > > > > > > <mailto:sage-s...@googlegroups.com> > Im Auftrag von Dima >> > > > > > > > Pasechnik >> > > > > > > > Gesendet: Mittwoch, 3. März 2021 18:28 >> > > > > > > > An: sage-support <sage-s...@googlegroups.com >> > > > > > > > <mailto:sage-s...@googlegroups.com> > >> > > > > > > > Betreff: Re: [sage-support] problem compiling sage 9.2 on >> > > > > > > > RHEL >> > > > > > > > 6 >> > > > > > > > >> > > > > > > > On Wed, Mar 3, 2021 at 5:15 PM 'Klaus Hackenberg' via >> > > > > > > > sage-support <sage-s...@googlegroups.com >> > > > > > > > <mailto:sage-s...@googlegroups.com> > wrote: >> > > > > > > > > >> > > > > > > > > High, >> > > > > > > > > I tried to compile sage 9.2 on a server running RHEL 6. >> > > > > > > > > I use gcc 9.2.0 to compile and the following commands >> > > > > > > > > >> > > > > > > > > ./configure --with-gmp=gmp >> > > > > > > > might be in error. >> > > > > > > > >> > > > > > > > What did you mean to achieve by '--with-gmp=gmp' ? By default >> > > > > > > > Sage will look for a systemwide GMP installation and try to >> > > > > > > > use it (else it will build its own) But Sage needs GMP version >> > > > > > > > 6.1, at least. Most probably what you have on the 10-years old >> > > > > > > > RHEL 6 is still GMP version 4, so it won't fly. >> > > > > > > > >> > > > > > > > You probably want to force building GMP rather than much >> > > > > > > > iffier MPIR, so you'd probably need '--with-mp=gmp' in this >> > > > > > > > case. >> > > > > > > > >> > > > > > > > >> > > > > > > > >> > > > > > > > > make -j4 >> > > > > > > > > >> > > > > > > > > ppl-1.2 fails to compile whith the attached error log file. >> > > > > > > > > Do you have any idea what's going wrong and how to fix it? >> > > > > > > > > Regards, Klaus Hackenberg >> > > > > > > > > >> > > > > > > > > -- >> > > > > > > > > You received this message because you are subscribed to the >> > > > > > > > > Google Groups "sage-support" group. >> > > > > > > > > To unsubscribe from this group and stop receiving emails >> > > > > > > > > from it, send an email to sage-support...@googlegroups.com >> > > > > > > > > <mailto:sage-support...@googlegroups.com> . >> > > > > > > > > To view this discussion on the web visit >> > > > > > > > > https://groups.google.com/d/msgid/sage-support/e1713003-dbe6-475b-9ffd-214d005cfec5n%40googlegroups.com. >> > > > > > > > > >> > > > > > > > >> > > > > > > > -- >> > > > > > > > You received this message because you are subscribed to a >> > > > > > > > topic in the Google Groups "sage-support" group. >> > > > > > > > To unsubscribe from this topic, visit >> > > > > > > > https://groups.google.com/d/topic/sage-support/GniJKQ0MaMY/unsubscribe. >> > > > > > > > >> > > > > > > > To unsubscribe from this group and all its topics, send an >> > > > > > > > email to sage-support...@googlegroups.com >> > > > > > > > <mailto:sage-support...@googlegroups.com> . >> > > > > > > > To view this discussion on the web visit >> > > > > > > > https://groups.google.com/d/msgid/sage-support/CAAWYfq0i67G3DRu4oeLSTegkFw0Dr-FtFVHnpQShXze%3DSi7h5g%40mail.gmail.com. >> > > > > > > > >> > > > > > > > >> > > > > > > > -- >> > > > > > > > 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