This is from Ubuntu 18.04 Linux 64-bit
Sage built from source. The build had an error as follows
=================
The following package(s) may have failed to build (not necessarily
during this run of 'make all-start'):
* package: r-3.6.2
log file: /usr/local/CA/sage-9.0/logs/pkgs/r-3.6.2.log
build directory: /usr/local/CA/sage-9.0/local/var/tmp/sage/build/r-3.6.2
The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
Makefile:31: recipe for target 'all-start' failed
make[1]: *** [all-start] Error 1
make[1]: Leaving directory '/usr/local/CA/sage-9.0'
Makefile:13: recipe for target 'all' failed
I then tried to run sage, getting the following error log.
***************************************************************************
IPython post-mortem report
{'commit_hash': u'033ab93c7',
'commit_source': 'installation',
'default_encoding': 'UTF-8',
'ipython_path':
'/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/IPython',
'ipython_version': '5.8.0',
'os_name': 'posix',
'platform': 'Linux-5.0.0-37-generic-x86_64-with-debian-buster-sid',
'sys_executable': '/usr/local/CA/sage-8.8/local/bin/python2',
'sys_platform': 'linux2',
'sys_version': '2.7.15 (default, Sep 4 2019, 11:48:34) \n[GCC 4.8.5 20150623
(Red Hat 4.8.5-39)]'}
***************************************************************************
***************************************************************************
Crash traceback:
---------------------------------------------------------------------------
---------------------------------------------------------------------------
ImportError Python 2.7.15: /usr/local/CA/sage-8.8/local/bin/python2
Wed Jan 8 16:34:13 2020
A problem occurred executing Python code. Here is the sequence of function
calls leading up to the error, with the most recent (innermost) call last.
/usr/local/CA/sage-8.8/src/bin/sage-ipython in <module>()
1 #!/usr/bin/env sage-python23
2 # -*- coding: utf-8 -*-
3 """
4 Sage IPython startup script.
5 """
6
7 # Display startup banner. Do this before anything else to give the user
8 # early feedback that Sage is starting.
9 from sage.misc.banner import banner
10 banner()
11
12 from sage.repl.interpreter import SageTerminalApp
13
14 app = SageTerminalApp.instance()
---> 15 app.initialize()
global app.initialize = <bound method SageTerminalApp.initialize of
<sage.repl.interpreter.SageTerminalApp object at 0x7f2348145c50>>
16 app.start()
<decorator-gen-110> in initialize(self=<sage.repl.interpreter.SageTerminalApp
object>, argv=None)
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/traitlets/config/application.pyc
in catch_config_error(method=<function initialize>,
app=<sage.repl.interpreter.SageTerminalApp object>, *args=(None,), **kwargs={})
72 TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR = False
73 else:
74 raise ValueError("Unsupported value for environment variable:
'TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR' is set to '%s' which is none of
{'0', '1', 'false', 'true', ''}."% _envvar )
75
76
77 @decorator
78 def catch_config_error(method, app, *args, **kwargs):
79 """Method decorator for catching invalid config
(Trait/ArgumentErrors) during init.
80
81 On a TraitError (generally caused by bad config), this will print
the trait's
82 message, and exit the app.
83
84 For use on init methods, to prevent invoking excepthook on invalid
input.
85 """
86 try:
---> 87 return method(app, *args, **kwargs)
method = <function initialize at 0x7f2342cc56e0>
app = <sage.repl.interpreter.SageTerminalApp object at 0x7f2348145c50>
args = (None,)
kwargs = {}
88 except (TraitError, ArgumentError) as e:
89 app.print_help()
90 app.log.fatal("Bad config encountered during initialization:")
91 app.log.fatal(str(e))
92 app.log.debug("Config at the time: %s", app.config)
93 app.exit(1)
94
95
96 class ApplicationError(Exception):
97 pass
98
99
100 class LevelFormatter(logging.Formatter):
101 """Formatter with additional `highlevel` record
102
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/IPython/terminal/ipapp.pyc
in initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None)
301
302 return super(TerminalIPythonApp, self).parse_command_line(argv)
303
304 @catch_config_error
305 def initialize(self, argv=None):
306 """Do actions after construct, but before starting the app."""
307 super(TerminalIPythonApp, self).initialize(argv)
308 if self.subapp is not None:
309 # don't bother initializing further, starting subapp
310 return
311 # print self.extra_args
312 if self.extra_args and not self.something_to_run:
313 self.file_to_run = self.extra_args[0]
314 self.init_path()
315 # create the shell
--> 316 self.init_shell()
self.init_shell = <bound method SageTerminalApp.init_shell of
<sage.repl.interpreter.SageTerminalApp object at 0x7f2348145c50>>
317 # and draw the banner
318 self.init_banner()
319 # Now a variety of things that happen after the banner is
printed.
320 self.init_gui_pylab()
321 self.init_extensions()
322 self.init_code()
323
324 def init_shell(self):
325 """initialize the InteractiveShell instance"""
326 # Create an InteractiveShell instance.
327 # shell.display_banner should always be False for the terminal
328 # based app, because we call shell.show_banner() by hand below
329 # so the banner shows *before* all extension loading stuff.
330 self.shell = self.interactive_shell_class.instance(parent=self,
331 profile_dir=self.profile_dir,
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/repl/interpreter.pyc
in init_shell(self=<sage.repl.interpreter.SageTerminalApp object>)
743 self.shell.has_sage_extensions = SAGE_EXTENSION in
self.extensions
744
745 # Load the %lprun extension if available
746 try:
747 import line_profiler
748 except ImportError:
749 pass
750 else:
751 self.extensions.append('line_profiler')
752
753 if self.shell.has_sage_extensions:
754 self.extensions.remove(SAGE_EXTENSION)
755
756 # load sage extension here to get a crash if
757 # something is wrong with the sage library
--> 758 self.shell.extension_manager.load_extension(SAGE_EXTENSION)
self.shell.extension_manager.load_extension = <bound method
ExtensionManager.load_extension of <IPython.core.extensions.ExtensionManager
object at 0x7f2340066710>>
global SAGE_EXTENSION = 'sage'
759
760
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/IPython/core/extensions.pyc
in load_extension(self=<IPython.core.extensions.ExtensionManager object>,
module_str='sage')
70
71 Returns the string "already loaded" if the extension is already
loaded,
72 "no load function" if the module doesn't have a
load_ipython_extension
73 function, or None if it succeeded.
74 """
75 if module_str in self.loaded:
76 return "already loaded"
77
78 from IPython.utils.syspathcontext import prepended_to_syspath
79
80 with self.shell.builtin_trap:
81 if module_str not in sys.modules:
82 with prepended_to_syspath(self.ipython_extension_dir):
83 __import__(module_str)
84 mod = sys.modules[module_str]
---> 85 if self._call_load_ipython_extension(mod):
self._call_load_ipython_extension = <bound method
ExtensionManager._call_load_ipython_extension of
<IPython.core.extensions.ExtensionManager object at 0x7f2340066710>>
mod = <module 'sage' from
'/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/__init__.pyc'>
86 self.loaded.add(module_str)
87 else:
88 return "no load function"
89
90 def unload_extension(self, module_str):
91 """Unload an IPython extension by its module name.
92
93 This function looks up the extension's name in ``sys.modules``
and
94 simply calls ``mod.unload_ipython_extension(self)``.
95
96 Returns the string "no unload function" if the extension
doesn't define
97 a function to unload itself, "not loaded" if the extension
isn't loaded,
98 otherwise None.
99 """
100 if module_str not in self.loaded:
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/IPython/core/extensions.pyc
in _call_load_ipython_extension(self=<IPython.core.extensions.ExtensionManager
object>, mod=<module 'sage' from
'/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/__init__.pyc'>)
117 """
118 from IPython.utils.syspathcontext import prepended_to_syspath
119
120 if (module_str in self.loaded) and (module_str in sys.modules):
121 self.unload_extension(module_str)
122 mod = sys.modules[module_str]
123 with prepended_to_syspath(self.ipython_extension_dir):
124 reload(mod)
125 if self._call_load_ipython_extension(mod):
126 self.loaded.add(module_str)
127 else:
128 self.load_extension(module_str)
129
130 def _call_load_ipython_extension(self, mod):
131 if hasattr(mod, 'load_ipython_extension'):
--> 132 mod.load_ipython_extension(self.shell)
mod.load_ipython_extension = <function load_ipython_extension at
0x7f234aa0e8c0>
self.shell = <sage.repl.interpreter.SageTerminalInteractiveShell object
at 0x7f2342cea4d0>
133 return True
134
135 def _call_unload_ipython_extension(self, mod):
136 if hasattr(mod, 'unload_ipython_extension'):
137 mod.unload_ipython_extension(self.shell)
138 return True
139
140 def install_extension(self, url, filename=None):
141 """Download and install an IPython extension.
142
143 If filename is given, the file will be so named (inside the
extension
144 directory). Otherwise, the name from the URL will be used. The
file must
145 have a .py or .zip extension; otherwise, a ValueError will be
raised.
146
147 Returns the full path to the installed file.
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/__init__.pyc in
load_ipython_extension(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell
object>,))
1 __all__ = ['all']
2
3 # Set sage.__version__ to the current version number. This is analogous
4 # to many other Python packages.
5 from sage.version import version as __version__
6
7 # Make sure that the correct zlib library is loaded. This is needed
8 # to prevent the system zlib to be loaded instead of the Sage one.
9 # See https://trac.sagemath.org/ticket/23122
10 import zlib
11
12 # IPython calls this when starting up
13 def load_ipython_extension(*args):
14 import sage.repl.ipython_extension
---> 15 sage.repl.ipython_extension.load_ipython_extension(*args)
sage.repl.ipython_extension.load_ipython_extension = <function
load_ipython_extension at 0x7f2333521578>
args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at
0x7f2342cea4d0>,)
16
17
18 # Monkey-patch inspect.isfunction() to support Cython functions.
19 def isfunction(obj):
20 """
21 Check whether something is a function.
22
23 We assume that anything which has a genuine ``__code__``
24 attribute (not using ``__getattr__`` overrides) is a function.
25 This is meant to support Cython functions.
26
27 EXAMPLES::
28
29 sage: from inspect import isfunction
30 sage: def f(): pass
31 sage: isfunction(f)
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/repl/ipython_extension.pyc
in wrapper(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell
object>,), **kwargs={})
547 ....: if work:
548 ....: return 'foo worked'
549 ....: raise RuntimeError("foo didn't work")
550 sage: foo(False)
551 Traceback (most recent call last):
552 ...
553 RuntimeError: foo didn't work
554 sage: foo(True)
555 'foo worked'
556 sage: foo(False)
557 sage: foo(True)
558 """
559 @wraps(func)
560 def wrapper(*args, **kwargs):
561 if not wrapper.has_run:
--> 562 result = func(*args, **kwargs)
result = undefined
global func = undefined
args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at
0x7f2342cea4d0>,)
kwargs = {}
563 wrapper.has_run = True
564 return result
565 wrapper.has_run = False
566 return wrapper
567
568
569 @run_once
570 def load_ipython_extension(ip):
571 """
572 Load the extension in IPython.
573 """
574 # this modifies ip
575 SageCustomizations(shell=ip)
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/repl/ipython_extension.pyc
in
load_ipython_extension(ip=<sage.repl.interpreter.SageTerminalInteractiveShell
object>)
560 def wrapper(*args, **kwargs):
561 if not wrapper.has_run:
562 result = func(*args, **kwargs)
563 wrapper.has_run = True
564 return result
565 wrapper.has_run = False
566 return wrapper
567
568
569 @run_once
570 def load_ipython_extension(ip):
571 """
572 Load the extension in IPython.
573 """
574 # this modifies ip
--> 575 SageCustomizations(shell=ip)
global SageCustomizations = <class
'sage.repl.ipython_extension.SageCustomizations'>
global shell = undefined
ip = <sage.repl.interpreter.SageTerminalInteractiveShell object at
0x7f2342cea4d0>
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/repl/ipython_extension.pyc
in __init__(self=<sage.repl.ipython_extension.SageCustomizations object>,
shell=<sage.repl.interpreter.SageTerminalInteractiveShell object>)
418 def __init__(self, shell=None):
419 """
420 Initialize the Sage plugin.
421 """
422 self.shell = shell
423
424 self.auto_magics = SageMagics(shell)
425 self.shell.register_magics(self.auto_magics)
426
427 import sage.misc.edit_module as edit_module
428 self.shell.set_hook('editor', edit_module.edit_devel)
429
430 self.init_inspector()
431 self.init_line_transforms()
432
--> 433 import sage.all # until sage's import hell is fixed
sage.all = undefined
434
435 self.shell.verbose_quit = True
436 self.set_quit_hook()
437
438 self.register_interface_magics()
439
440 if SAGE_IMPORTALL == 'yes':
441 self.init_environment()
442
443 def register_interface_magics(self):
444 """
445 Register magics for each of the Sage interfaces
446 """
447 from sage.repl.interface_magic import InterfaceMagic
448 InterfaceMagic.register_all(self.shell)
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/all.py in
<module>()
69 import math
70
71 from sage.env import SAGE_ROOT, SAGE_SRC, SAGE_DOC_SRC, SAGE_LOCAL,
DOT_SAGE, SAGE_ENV
72
73
74 ###################################################################
75
76 # This import also sets up the interrupt handler
77 from cysignals.signals import (AlarmInterrupt, SignalError,
78 sig_on_reset as sig_on_count)
79
80 from time import sleep
81 from functools import reduce # in order to keep reduce in python3
82
83 import sage.misc.lazy_import
---> 84 from sage.misc.all import * # takes a while
global sage.misc.all = undefined
85 from sage.typeset.all import *
86 from sage.repl.all import *
87
88 from sage.misc.sh import sh
89
90 from sage.libs.all import *
91 from sage.data_structures.all import *
92 from sage.doctest.all import *
93
94 from sage.structure.all import *
95 from sage.rings.all import *
96 from sage.arith.all import *
97 from sage.matrix.all import *
98
99 from sage.symbolic.all import *
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/misc/all.py in
<module>()
69
70 from .defaults import (set_default_variable_name,
71 series_precision, set_series_precision)
72
73 from .sage_eval import sage_eval, sageobj
74
75 from .sage_input import sage_input
76
77 lazy_import("sage.misc.cython", ["cython_lambda",
"cython_create_local_so"])
78 lazy_import("sage.misc.cython", "cython_compile", "cython")
79
80 from .persist import save, load, dumps, loads, db, db_save
81
82 from .func_persist import func_persist
83
---> 84 from .functional import (additive_order,
global functional = undefined
global additive_order = undefined
global base_ring = undefined
global base_field = undefined
global basis = undefined
global category = undefined
global charpoly = undefined
global characteristic_polynomial = undefined
global coerce = undefined
global cyclotomic_polynomial = undefined
global decomposition = undefined
global denominator = undefined
global det = undefined
global dimension = undefined
global dim = undefined
global discriminant = undefined
global disc = undefined
global eta = undefined
global fcp = undefined
global gen = undefined
global gens = undefined
global hecke_operator = undefined
global image = undefined
global integral = undefined
global integrate = undefined
global integral_closure = undefined
global interval = undefined
global xinterval = undefined
global is_commutative = undefined
global is_even = undefined
global is_integrally_closed = undefined
global is_field = undefined
global is_odd = undefined
global kernel = undefined
global krull_dimension = undefined
global lift = undefined
global log = undefined
global log_b = undefined
global minimal_polynomial = undefined
global minpoly = undefined
global multiplicative_order = undefined
global ngens = undefined
global norm = undefined
global numerator = undefined
global numerical_approx = undefined
global n = undefined
global N = undefined
global objgens = undefined
global objgen = undefined
global order = undefined
global rank = undefined
global regulator = undefined
global round = undefined
global quotient = undefined
global quo = undefined
global isqrt = undefined
global squarefree_part = undefined
global symbolic_sum = undefined
global sum = undefined
global symbolic_prod = undefined
global product = undefined
global transpose = undefined
85 base_ring,
86 base_field,
87 basis,
88 category,
89 charpoly,
90 characteristic_polynomial,
91 coerce,
92 cyclotomic_polynomial,
93 decomposition,
94 denominator,
95 det,
96 dimension,
97 dim,
98 discriminant,
99 disc,
/usr/local/CA/sage-8.8/local/lib/python2.7/site-packages/sage/misc/functional.py
in <module>()
12 - David Joyner (2005-12-20): More Examples
13 """
14
#*****************************************************************************
15 # Copyright (C) 2004 William Stein <wst...@gmail.com>
16 #
17 # This program is free software: you can redistribute it and/or modify
18 # it under the terms of the GNU General Public License as published by
19 # the Free Software Foundation, either version 2 of the License, or
20 # (at your option) any later version.
21 # http://www.gnu.org/licenses/
22
#*****************************************************************************
23 from __future__ import absolute_import
24 from six.moves import range, builtins
25 from six import integer_types
26
---> 27 from sage.rings.complex_double import CDF
global sage.rings.complex_double = undefined
global CDF = undefined
28 from sage.rings.real_double import RDF, RealDoubleElement
29 from sage.rings.integer_ring import ZZ
30 from sage.rings.integer import Integer
31 from sage.misc.superseded import deprecation
32
33
##############################################################################
34 # There are many functions on elements of a ring, which mathematicians
35 # usually write f(x), e.g., it is weird to write x.log() and natural
36 # to write log(x). The functions below allow for the more familiar
syntax.
37
##############################################################################
38
39
40 def additive_order(x):
41 """
42 Return the additive order of ``x``.
ImportError: libgfortran.so.3: cannot open shared object file: No such file or
directory
***************************************************************************
History of session input:
*** Last line of input (may not be in above history):
--
You received this message because you are subscribed to the Google Groups
"sage-support" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to sage-support+unsubscr...@googlegroups.com.
To view this discussion on the web visit
https://groups.google.com/d/msgid/sage-support/20200108164225.GA2516%40bianchi5.
