On Sun, Oct 13, 2019 at 4:57 PM David Coudert <david.coud...@inria.fr> wrote: > > It’s working ! I can now complete compilation. > > Thanks both of you for the help. > > Now I have to remember to remove MacOSX10.14.sdk when it will no longer be > needed, but when…
hmm, so does this mean that you didn't do a full rebuild of Sage after OS upgrade? Cause you are on 10.15 now, no? > > > David. > > Le 13 oct. 2019 à 17:32, Isuru Fernando <isu...@gmail.com> a écrit : > > You have the same issue as https://github.com/sagemath/binary-pkg/issues/19 > > Can you try downloading 10.14 SDK from > https://github.com/phracker/MacOSX-SDKs/releases/download/10.14-beta4/MacOSX10.14.sdk.tar.xz > extracting it inside > `/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk` > > Isuru > > On Sun, Oct 13, 2019 at 10:27 AM David Coudert <david.coud...@inria.fr> wrote: >> >> No, but MacOSX10.15.sdk >> >> confetti:lib dcoudert$ ll >> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk >> ls: >> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk: >> No such file or directory >> confetti:lib dcoudert$ ll >> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/ >> total 0 >> drwxr-xr-x 4 root wheel 128 12 sep 05:13 DriverKit19.0.sdk >> drwxr-xr-x 8 root wheel 256 12 sep 05:13 MacOSX.sdk >> lrwxr-xr-x 1 root wheel 10 8 oct 15:28 MacOSX10.15.sdk -> MacOSX.sdk >> >> >> Le 13 oct. 2019 à 17:16, Isuru Fernando <isu...@gmail.com> a écrit : >> >> Hi, >> >> Do you have the folder >> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk >> ? >> >> Isuru >> >> On Sun, Oct 13, 2019 at 10:14 AM David Coudert <david.coud...@inria.fr> >> wrote: >>> >>> here it is. >>> >>> confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran >>> -print-prog-name=ld >>> ld >>> confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran -v >>> Using built-in specs. >>> COLLECT_GCC=/Users/dcoudert/sage3/sage/local/bin/gfortran >>> COLLECT_LTO_WRAPPER=/Users/dcoudert/sage3/sage/local/libexec/gcc/x86_64-apple-darwin18.6.0/7.4.0/lto-wrapper >>> Target: x86_64-apple-darwin18.6.0 >>> Configured with: ../src/configure --prefix=/Users/dcoudert/sage3/sage/local >>> --with-local-prefix=/Users/dcoudert/sage3/sage/local >>> --with-gmp=/Users/dcoudert/sage3/sage/local >>> --with-mpfr=/Users/dcoudert/sage3/sage/local >>> --with-mpc=/Users/dcoudert/sage3/sage/local --with-system-zlib >>> --without-isl --disable-multilib --disable-nls --disable-libitm >>> --with-build-config=bootstrap-debug --without-isl --without-cloog >>> --with-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk >>> --disable-bootstrap --enable-languages=fortran >>> Thread model: posix >>> gcc version 7.4.0 (GCC) >>> >>> >>> Le 13 oct. 2019 à 16:47, Isuru Fernando <isu...@gmail.com> a écrit : >>> >>> Hi, >>> >>> This is a problem with gfortran using an incorrect linker. >>> >>> Can you post the output of, >>> >>> /Users/dcoudert/sage3/sage/local/bin/gfortran -print-prog-name=ld >>> >>> /Users/dcoudert/sage3/sage/local/bin/gfortran -v >>> >>> Isuru >>> >>> >>> On Sun, Oct 13, 2019 at 8:21 AM David Coudert <david.coud...@inria.fr> >>> wrote: >>>> >>>> confetti:lib dcoudert$ otool -L libfflas.dylib >>>> libfflas.dylib: >>>> /Users/dcoudert/sage3/sage/local/lib/libfflas.1.dylib (compatibility >>>> version 2.0.0, current version 2.0.0) >>>> /Users/dcoudert/sage3/sage/local/lib/libgivaro.9.dylib (compatibility >>>> version 11.0.0, current version 11.1.0) >>>> /Users/dcoudert/sage3/sage/local/lib/libgmp.23.dylib (compatibility >>>> version 24.0.0, current version 24.3.0) >>>> /Users/dcoudert/sage3/sage/local/lib/libgmpxx.8.dylib (compatibility >>>> version 13.0.0, current version 13.3.0) >>>> /Users/dcoudert/sage3/sage/local/lib/libopenblas_haswellp-r0.3.6.dylib >>>> (compatibility version 0.0.0, current version 0.0.0) >>>> /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version >>>> 400.9.4) >>>> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version >>>> 1252.250.1) >>>> >>>> >>>> Le 13 oct. 2019 à 15:19, Dima Pasechnik <dimp...@gmail.com> a écrit : >>>> >>>> oops sorry, your gfortran is ok. >>>> how about fflas* package, it is probably broken... >>>> >>>> On Sun, 13 Oct 2019, 14:17 Dima Pasechnik, <dimp...@gmail.com> wrote: >>>>> >>>>> are you building gfortran in Sage, or using a prebuilt one? >>>>> >>>>> it might be that its libgfortran got broken >>>>> >>>>> On Sun, 13 Oct 2019, 13:01 David Coudert, <david.coud...@inria.fr> wrote: >>>>>> >>>>>> >>>>>> >>>>>> confetti:lib dcoudert$ pwd >>>>>> >>>>>> /Users/dcoudert/sage3/sage/local/lib >>>>>> >>>>>> confetti:lib dcoudert$ otool -L libgfortran.dylib >>>>>> >>>>>> libgfortran.dylib: >>>>>> >>>>>> /Users/dcoudert/sage3/sage/local/lib/libgfortran.4.dylib (compatibility >>>>>> version 5.0.0, current version 5.0.0) >>>>>> >>>>>> /Users/dcoudert/sage3/sage/local/lib/libquadmath.0.dylib (compatibility >>>>>> version 1.0.0, current version 1.0.0) >>>>>> >>>>>> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version >>>>>> 1252.250.1) >>>>>> >>>>>> /Users/dcoudert/sage3/sage/local/lib/libgcc_s.1.dylib (compatibility >>>>>> version 1.0.0, current version 1.0.0) >>>>>> >>>>>> >>>>>> >>>>>> but I don't have the 2 others >>>>>> >>>>>> confetti:sage dcoudert$ ls -lR | grep ftpack | grep dylib >>>>>> >>>>>> confetti:sage dcoudert$ pwd >>>>>> >>>>>> >>>>>> /Users/dcoudert/sage3/sage >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> Le dimanche 13 octobre 2019 13:48:55 UTC+2, Dima Pasechnik a écrit : >>>>>>> >>>>>>> I gather that the error comes from one of -ldfftpack -lfftpack >>>>>>> -lgfortran >>>>>>> being incorrectly linked/broken. >>>>>>> >>>>>>> please locate the relevant lib*.dylib files (in SAGE_LOCAL?) and run >>>>>>> "otool -L" on each of them >>>>>>> to see if they are OK. >>>>>>> >>>>>>> >>>>>>> On Sun, Oct 13, 2019 at 12:43 PM David Coudert <david....@inria.fr> >>>>>>> wrote: >>>>>>> > >>>>>>> > it's an incremental build from 9.0.beta0. >>>>>>> > I upgraded my OS in July after a system crash. So I had to reinstall >>>>>>> > everything from scratch. >>>>>>> > >>>>>>> > In case, I have Xcode Version 11.1 (11A1027). >>>>>>> > >>>>>>> > Le dimanche 13 octobre 2019 13:29:21 UTC+2, Dima Pasechnik a écrit : >>>>>>> >> >>>>>>> >> Is this a build from scratch? >>>>>>> >> (after an OS upgrade, incremental builds may break) >>>>>>> >> >>>>>>> >> >>>>>>> >> On Sun, Oct 13, 2019 at 12:19 PM David Coudert <david....@inria.fr> >>>>>>> >> wrote: >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > Le dimanche 13 octobre 2019 12:53:02 UTC+2, Dima Pasechnik a écrit >>>>>>> >> > : >>>>>>> >> >> >>>>>>> >> >> We have already seen that puzzling >>>>>>> >> >> >>>>>>> >> >> ld: library not found for -lSystem >>>>>>> >> >> >>>>>>> >> >> error message. >>>>>>> >> >> >>>>>>> >> >> Is there a /usr/lib/libSystem.dylib present? >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > Yes: >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > confetti:sage dcoudert$ ll /usr/lib/libSystem.dylib >>>>>>> >> > >>>>>>> >> > lrwxr-xr-x 1 root wheel 17 19 jul 08:15 >>>>>>> >> > /usr/lib/libSystem.dylib -> libSystem.B.dylib >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > >>>>>>> >> >> >>>>>>> >> >> If yes, then I guess this means a broken dependency of scipy, more >>>>>>> >> >> specifically, a broken dylib, built >>>>>>> >> >> along the way. >>>>>>> >> >> or Xcode that needs to be reinstalled... >>>>>>> >> >> >>>>>>> >> >> Can you do >>>>>>> >> >> ./sage --python >>>>>>> >> >> >> import numpy >>>>>>> >> >> >>>>>>> >> >> without an error? >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > yes too: >>>>>>> >> > >>>>>>> >> > confetti:sage dcoudert$ ./sage --python >>>>>>> >> > >>>>>>> >> > Python 3.7.3 (default, Oct 13 2019, 02:06:13) >>>>>>> >> > >>>>>>> >> > [Clang 11.0.0 (clang-1100.0.33.8)] on darwin >>>>>>> >> > >>>>>>> >> > Type "help", "copyright", "credits" or "license" for more >>>>>>> >> > information. >>>>>>> >> > >>>>>>> >> > >>> import numpy >>>>>>> >> > >>>>>>> >> > >>> >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > >>>>>>> >> > -- >>>>>>> >> > You received this message because you are subscribed to the Google >>>>>>> >> > Groups "sage-devel" group. >>>>>>> >> > To unsubscribe from this group and stop receiving emails from it, >>>>>>> >> > send an email to sage-...@googlegroups.com. >>>>>>> >> > To view this discussion on the web visit >>>>>>> >> > https://groups.google.com/d/msgid/sage-devel/848357f8-1c79-481a-abb3-e87331775d8a%40googlegroups.com. >>>>>>> > >>>>>>> > -- >>>>>>> > You received this message because you are subscribed to the Google >>>>>>> > Groups "sage-devel" group. >>>>>>> > To unsubscribe from this group and stop receiving emails from it, >>>>>>> > send an email to sage-...@googlegroups.com. >>>>>>> > To view this discussion on the web visit >>>>>>> > https://groups.google.com/d/msgid/sage-devel/752fcf51-af9a-4315-b62d-f15dab05f4ea%40googlegroups.com. >>>>>> >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "sage-devel" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>>> an email to sage-devel+unsubscr...@googlegroups.com. >>>>>> To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/sage-devel/0e66a999-c1d3-47e4-9ff6-2a929c4d820a%40googlegroups.com. >>>> >>>> >>>> -- >>>> You received this message because you are subscribed to a topic in the >>>> Google Groups "sage-devel" group. >>>> To unsubscribe from this topic, visit >>>> https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. >>>> To unsubscribe from this group and all its topics, send an email to >>>> sage-devel+unsubscr...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3RJZ8%2Bp4gqHUbDH2bfYYrNUqrdssxANzg4Ltbefzt-DA%40mail.gmail.com. >>>> >>>> >>>> ---- >>>> David Coudert >>>> Equipe-Projet COATI >>>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée >>>> Université Côte d’Azur, Inria, CNRS, I3S, France >>>> http://www-sop.inria.fr/members/David.Coudert >>>> >>>> >>>> -- >>>> You received this message because you are subscribed to the Google Groups >>>> "sage-devel" group. >>>> To unsubscribe from this group and stop receiving emails from it, send an >>>> email to sage-devel+unsubscr...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-devel/2070FE77-6360-4B60-ADBF-C0483413C43E%40inria.fr. >>> >>> >>> -- >>> You received this message because you are subscribed to a topic in the >>> Google Groups "sage-devel" group. >>> To unsubscribe from this topic, visit >>> https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. >>> To unsubscribe from this group and all its topics, send an email to >>> sage-devel+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/CA%2B01voMr95sDiUZVEdLi-aGkDxu0%3DNh5Ha%2B6VGKSMqb%2BRXBAEQ%40mail.gmail.com. >>> >>> >>> ---- >>> David Coudert >>> Equipe-Projet COATI >>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée >>> Université Côte d’Azur, Inria, CNRS, I3S, France >>> http://www-sop.inria.fr/members/David.Coudert >>> >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "sage-devel" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to sage-devel+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/F36C2728-EB9B-4278-9D3D-B6AB4EE1E49C%40inria.fr. >> >> >> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "sage-devel" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> sage-devel+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/CA%2B01voPqaumXN8djLY5e-cz3HGCKRm2PNHf7yNdTuBQ8TBZ-ug%40mail.gmail.com. >> >> >> ---- >> David Coudert >> Equipe-Projet COATI >> Centre de Recherche INRIA Sophia Antipolis - Méditerranée >> Université Côte d’Azur, Inria, CNRS, I3S, France >> http://www-sop.inria.fr/members/David.Coudert >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-devel" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-devel+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/76D98730-1604-481C-867B-4451AFD07CA7%40inria.fr. > > > -- > You received this message because you are subscribed to a topic in the Google > Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CA%2B01voOmPj__0NHNJ6g4pyM3ZpL9stVof2hA6pix%2BXphkccPdg%40mail.gmail.com. > > > ---- > David Coudert > Equipe-Projet COATI > Centre de Recherche INRIA Sophia Antipolis - 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