You have the same issue as https://github.com/sagemath/binary-pkg/issues/19
Can you try downloading 10.14 SDK from https://github.com/phracker/MacOSX-SDKs/releases/download/10.14-beta4/MacOSX10.14.sdk.tar.xz extracting it inside `/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk` Isuru On Sun, Oct 13, 2019 at 10:27 AM David Coudert <david.coud...@inria.fr> wrote: > No, but MacOSX10.15.sdk > > confetti:lib dcoudert$ ll > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk > ls: > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk: > No such file or directory > confetti:lib dcoudert$ ll > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/ > total 0 > drwxr-xr-x 4 root wheel 128 12 sep 05:13 DriverKit19.0.sdk > drwxr-xr-x 8 root wheel 256 12 sep 05:13 MacOSX.sdk > lrwxr-xr-x 1 root wheel 10 8 oct 15:28 MacOSX10.15.sdk -> MacOSX.sdk > > > Le 13 oct. 2019 à 17:16, Isuru Fernando <isu...@gmail.com> a écrit : > > Hi, > > Do you have the folder > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk > ? > > Isuru > > On Sun, Oct 13, 2019 at 10:14 AM David Coudert <david.coud...@inria.fr> > wrote: > >> here it is. >> >> confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran >> -print-prog-name=ld >> ld >> confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran -v >> Using built-in specs. >> COLLECT_GCC=/Users/dcoudert/sage3/sage/local/bin/gfortran >> >> COLLECT_LTO_WRAPPER=/Users/dcoudert/sage3/sage/local/libexec/gcc/x86_64-apple-darwin18.6.0/7.4.0/lto-wrapper >> Target: x86_64-apple-darwin18.6.0 >> Configured with: ../src/configure >> --prefix=/Users/dcoudert/sage3/sage/local >> --with-local-prefix=/Users/dcoudert/sage3/sage/local >> --with-gmp=/Users/dcoudert/sage3/sage/local >> --with-mpfr=/Users/dcoudert/sage3/sage/local >> --with-mpc=/Users/dcoudert/sage3/sage/local --with-system-zlib >> --without-isl --disable-multilib --disable-nls --disable-libitm >> --with-build-config=bootstrap-debug --without-isl --without-cloog >> --with-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk >> --disable-bootstrap --enable-languages=fortran >> Thread model: posix >> gcc version 7.4.0 (GCC) >> >> >> Le 13 oct. 2019 à 16:47, Isuru Fernando <isu...@gmail.com> a écrit : >> >> Hi, >> >> This is a problem with gfortran using an incorrect linker. >> >> Can you post the output of, >> >> /Users/dcoudert/sage3/sage/local/bin/gfortran -print-prog-name=ld >> >> /Users/dcoudert/sage3/sage/local/bin/gfortran -v >> >> Isuru >> >> >> On Sun, Oct 13, 2019 at 8:21 AM David Coudert <david.coud...@inria.fr> >> wrote: >> >>> confetti:lib dcoudert$ otool -L libfflas.dylib >>> libfflas.dylib: >>> /Users/dcoudert/sage3/sage/local/lib/libfflas.1.dylib (compatibility >>> version 2.0.0, current version 2.0.0) >>> /Users/dcoudert/sage3/sage/local/lib/libgivaro.9.dylib (compatibility >>> version 11.0.0, current version 11.1.0) >>> /Users/dcoudert/sage3/sage/local/lib/libgmp.23.dylib (compatibility >>> version 24.0.0, current version 24.3.0) >>> /Users/dcoudert/sage3/sage/local/lib/libgmpxx.8.dylib (compatibility >>> version 13.0.0, current version 13.3.0) >>> /Users/dcoudert/sage3/sage/local/lib/libopenblas_haswellp-r0.3.6.dylib >>> (compatibility version 0.0.0, current version 0.0.0) >>> /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version >>> 400.9.4) >>> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version >>> 1252.250.1) >>> >>> >>> Le 13 oct. 2019 à 15:19, Dima Pasechnik <dimp...@gmail.com> a écrit : >>> >>> oops sorry, your gfortran is ok. >>> how about fflas* package, it is probably broken... >>> >>> On Sun, 13 Oct 2019, 14:17 Dima Pasechnik, <dimp...@gmail.com> wrote: >>> >>>> are you building gfortran in Sage, or using a prebuilt one? >>>> >>>> it might be that its libgfortran got broken >>>> >>>> On Sun, 13 Oct 2019, 13:01 David Coudert, <david.coud...@inria.fr> >>>> wrote: >>>> >>>>> >>>>> >>>>> confetti:lib dcoudert$ pwd >>>>> >>>>> /Users/dcoudert/sage3/sage/local/lib >>>>> >>>>> confetti:lib dcoudert$ otool -L libgfortran.dylib >>>>> >>>>> libgfortran.dylib: >>>>> >>>>> /Users/dcoudert/sage3/sage/local/lib/libgfortran.4.dylib >>>>> (compatibility version 5.0.0, current version 5.0.0) >>>>> >>>>> /Users/dcoudert/sage3/sage/local/lib/libquadmath.0.dylib >>>>> (compatibility version 1.0.0, current version 1.0.0) >>>>> >>>>> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current >>>>> version 1252.250.1) >>>>> >>>>> /Users/dcoudert/sage3/sage/local/lib/libgcc_s.1.dylib (compatibility >>>>> version 1.0.0, current version 1.0.0) >>>>> >>>>> >>>>> but I don't have the 2 others >>>>> >>>>> confetti:sage dcoudert$ ls -lR | grep ftpack | grep dylib >>>>> >>>>> confetti:sage dcoudert$ pwd >>>>> >>>>> /Users/dcoudert/sage3/sage >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> Le dimanche 13 octobre 2019 13:48:55 UTC+2, Dima Pasechnik a écrit : >>>>>> >>>>>> I gather that the error comes from one of -ldfftpack -lfftpack >>>>>> -lgfortran >>>>>> being incorrectly linked/broken. >>>>>> >>>>>> please locate the relevant lib*.dylib files (in SAGE_LOCAL?) and run >>>>>> "otool -L" on each of them >>>>>> to see if they are OK. >>>>>> >>>>>> >>>>>> On Sun, Oct 13, 2019 at 12:43 PM David Coudert <david....@inria.fr> >>>>>> wrote: >>>>>> > >>>>>> > it's an incremental build from 9.0.beta0. >>>>>> > I upgraded my OS in July after a system crash. So I had to >>>>>> reinstall everything from scratch. >>>>>> > >>>>>> > In case, I have Xcode Version 11.1 (11A1027). >>>>>> > >>>>>> > Le dimanche 13 octobre 2019 13:29:21 UTC+2, Dima Pasechnik a écrit : >>>>>> >>>>>> >> >>>>>> >> Is this a build from scratch? >>>>>> >> (after an OS upgrade, incremental builds may break) >>>>>> >> >>>>>> >> >>>>>> >> On Sun, Oct 13, 2019 at 12:19 PM David Coudert <david....@inria.fr> >>>>>> wrote: >>>>>> >> > >>>>>> >> > >>>>>> >> > >>>>>> >> > Le dimanche 13 octobre 2019 12:53:02 UTC+2, Dima Pasechnik a >>>>>> écrit : >>>>>> >> >> >>>>>> >> >> We have already seen that puzzling >>>>>> >> >> >>>>>> >> >> ld: library not found for -lSystem >>>>>> >> >> >>>>>> >> >> error message. >>>>>> >> >> >>>>>> >> >> Is there a /usr/lib/libSystem.dylib present? >>>>>> >> > >>>>>> >> > >>>>>> >> > Yes: >>>>>> >> > >>>>>> >> > >>>>>> >> > confetti:sage dcoudert$ ll /usr/lib/libSystem.dylib >>>>>> >> > >>>>>> >> > lrwxr-xr-x 1 root wheel 17 19 jul 08:15 >>>>>> /usr/lib/libSystem.dylib -> libSystem.B.dylib >>>>>> >> > >>>>>> >> > >>>>>> >> > >>>>>> >> >> >>>>>> >> >> If yes, then I guess this means a broken dependency of scipy, >>>>>> more >>>>>> >> >> specifically, a broken dylib, built >>>>>> >> >> along the way. >>>>>> >> >> or Xcode that needs to be reinstalled... >>>>>> >> >> >>>>>> >> >> Can you do >>>>>> >> >> ./sage --python >>>>>> >> >> >> import numpy >>>>>> >> >> >>>>>> >> >> without an error? >>>>>> >> > >>>>>> >> > >>>>>> >> > yes too: >>>>>> >> > >>>>>> >> > confetti:sage dcoudert$ ./sage --python >>>>>> >> > >>>>>> >> > Python 3.7.3 (default, Oct 13 2019, 02:06:13) >>>>>> >> > >>>>>> >> > [Clang 11.0.0 (clang-1100.0.33.8)] on darwin >>>>>> >> > >>>>>> >> > Type "help", "copyright", "credits" or "license" for more >>>>>> information. >>>>>> >> > >>>>>> >> > >>> import numpy >>>>>> >> > >>>>>> >> > >>> >>>>>> >> > >>>>>> >> > >>>>>> >> > >>>>>> >> > >>>>>> >> > -- >>>>>> >> > You received this message because you are subscribed to the >>>>>> Google Groups "sage-devel" group. >>>>>> >> > To unsubscribe from this group and stop receiving emails from >>>>>> it, send an email to sage-...@googlegroups.com. >>>>>> >> > To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/sage-devel/848357f8-1c79-481a-abb3-e87331775d8a%40googlegroups.com >>>>>> . >>>>>> > >>>>>> > -- >>>>>> > You received this message because you are subscribed to the Google >>>>>> Groups "sage-devel" group. >>>>>> > To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to sage-...@googlegroups.com. >>>>>> > To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/sage-devel/752fcf51-af9a-4315-b62d-f15dab05f4ea%40googlegroups.com >>>>>> . >>>>>> >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "sage-devel" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to sage-devel+unsubscr...@googlegroups.com. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/sage-devel/0e66a999-c1d3-47e4-9ff6-2a929c4d820a%40googlegroups.com >>>>> <https://groups.google.com/d/msgid/sage-devel/0e66a999-c1d3-47e4-9ff6-2a929c4d820a%40googlegroups.com?utm_medium=email&utm_source=footer> >>>>> . >>>>> >>>> >>> -- >>> You received this message because you are subscribed to a topic in the >>> Google Groups "sage-devel" group. >>> To unsubscribe from this topic, visit >>> https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. >>> To unsubscribe from this group and all its topics, send an email to >>> sage-devel+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/CAAWYfq3RJZ8%2Bp4gqHUbDH2bfYYrNUqrdssxANzg4Ltbefzt-DA%40mail.gmail.com >>> <https://groups.google.com/d/msgid/sage-devel/CAAWYfq3RJZ8%2Bp4gqHUbDH2bfYYrNUqrdssxANzg4Ltbefzt-DA%40mail.gmail.com?utm_medium=email&utm_source=footer> >>> . >>> >>> >>> ---- >>> David Coudert >>> Equipe-Projet COATI >>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée >>> Université Côte d’Azur, Inria, CNRS, I3S, France >>> http://www-sop.inria.fr/members/David.Coudert >>> >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/2070FE77-6360-4B60-ADBF-C0483413C43E%40inria.fr >>> <https://groups.google.com/d/msgid/sage-devel/2070FE77-6360-4B60-ADBF-C0483413C43E%40inria.fr?utm_medium=email&utm_source=footer> >>> . >>> >> >> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "sage-devel" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> sage-devel+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/CA%2B01voMr95sDiUZVEdLi-aGkDxu0%3DNh5Ha%2B6VGKSMqb%2BRXBAEQ%40mail.gmail.com >> <https://groups.google.com/d/msgid/sage-devel/CA%2B01voMr95sDiUZVEdLi-aGkDxu0%3DNh5Ha%2B6VGKSMqb%2BRXBAEQ%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> >> >> ---- >> David Coudert >> Equipe-Projet COATI >> Centre de Recherche INRIA Sophia Antipolis - Méditerranée >> Université Côte d’Azur, Inria, CNRS, I3S, France >> http://www-sop.inria.fr/members/David.Coudert >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-devel" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-devel+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/F36C2728-EB9B-4278-9D3D-B6AB4EE1E49C%40inria.fr >> <https://groups.google.com/d/msgid/sage-devel/F36C2728-EB9B-4278-9D3D-B6AB4EE1E49C%40inria.fr?utm_medium=email&utm_source=footer> >> . >> > > -- > You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CA%2B01voPqaumXN8djLY5e-cz3HGCKRm2PNHf7yNdTuBQ8TBZ-ug%40mail.gmail.com > <https://groups.google.com/d/msgid/sage-devel/CA%2B01voPqaumXN8djLY5e-cz3HGCKRm2PNHf7yNdTuBQ8TBZ-ug%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > > > ---- > David Coudert > Equipe-Projet COATI > Centre de Recherche INRIA Sophia Antipolis - Méditerranée > Université Côte d’Azur, Inria, CNRS, I3S, France > http://www-sop.inria.fr/members/David.Coudert > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/76D98730-1604-481C-867B-4451AFD07CA7%40inria.fr > <https://groups.google.com/d/msgid/sage-devel/76D98730-1604-481C-867B-4451AFD07CA7%40inria.fr?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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