Ahem...
It turns put that I can't reproduce my *origonal* problem : sustem's
upgrade seems to ghave fixed rthe problem.
Sorry for the noise...
However, "spdep" still doesn't install, but the problem si totally
different : its dependency "sf" doesn't compile due to a missing library
call in ... libgdal.so, of all things, which claims :
/usr/bin/ld: /usr/lib/libgdal.so: undefined reference to
`sqlite3_column_origin_name'
/usr/bin/ld: /usr/lib/libgdal.so: undefined reference to
`sqlite3_column_table_name'
collect2: error: ld returned 1 exit status
/usr/bin/ld: /usr/lib/libgdal.so: undefined reference to
`sqlite3_column_origin_name'
/usr/bin/ld: /usr/lib/libgdal.so: undefined reference to
`sqlite3_column_table_name'
collect2: error: ld returned 1 exit status
This is more explainable: "our" sqlite3 is at 3.22, whereas system's
sqlite3 is at 3.26+fossilbc891ac6b (whatever that means...).
I might try to update "our" sqlite3 *if* I can figure what is the "right"
source.... Debian unstable has 3.27 ; I might try that.
Hints ? Suggestions ?
Le samedi 16 février 2019 10:00:45 UTC+1, François Bissey a écrit :
>
> Can you send us the error message you get when installing sp/spdep?
> What version of openblas do you have on your system? The latest beta
> of sage uses openblas 0.3.5 which is latest available release.
>
> François
>
> > On 16/02/2019, at 21:46, Emmanuel Charpentier <emanuel.c...@gmail.com
> <javascript:>> wrote:
> >
> > Dear list,
> >
> > I started to get strange errors when installing some R packages ("sp"
> and "spdep", for the record). Ultimately, it boils down to the fact that
> those libraries need to use library system calls that exist in the system's
> openblas (these packages do install fine in system's R) but not in "our"
> openblas.
> >
> > A possible workaround would be to install Atlas systemwide and to point
> SAGE_ATLAS_LIB to that. But using ATLAS has some drawbacks (e. g.
> necessity to manually recompile in order to optimize BLAS and LAPACK).
> Hence my question :
> >
> > Is there a way to install (i. e. compile) Sage using system's BLAS and
> LAPACK provided by system's openblas ?
> >
> > PS : another workaround would be ti upgrade "our" openblas to a version
> supporting the needed calls. I do not know how to do this, and it sems
> soewhat intricate.
> >
> >
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