In the long section "Rationale for Cygwin and possible alternatives", I would add subsections for each alternative.

[hardware-assisted virtualization] typically does not come enabled by default 
(as a security measure)

Is that really true? What is non-secure about hardware-assisted virtualization?

the main problem is that 32-bit Windows applications have a user address space 
limited to just 2 GB (or 3 GB with a special boot flag). This is in fact not 
enough to fit all of Sage into memory at once.

Do you know how this compares to 32-bit Linux? I would expect a similar limit there.

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