Hi all, Yes, sage mostly works --- except I cannot create a 3D graphics object:
sage: point3d((0, 0, 0)) /home/eric/sage-src/local/lib/python2.7/site-packages/sage/repl/rich_output/display_manager.py:590: RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol failed to create file '/home/eric/.sage/temp/serre/4032/dir_Kn6nvZ/preview.png', see '/home/eric/.sage/temp/serre/4032/tmp_UBdIvW.txt' for details RichReprWarning, Graphics3d Object sage: The file /home/eric/.sage/temp/serre/4032/tmp_UBdIvW.txt disappears after exiting sage; but while sage is still running, I can view it, and it contains the following text: Error: Unable to access jarfile /home/eric/sage-src/local/share/jmol/JmolData.jar The directory /home/eric/sage-src/local/share/jmol/ does not exist: eric@serre:~$ cd /home/eric/sage-src/local/share/jmol/ bash: cd: /home/eric/sage-src/local/share/jmol/: No such file or directory eric@serre:~$ cd /home/eric/sage-src/local/share/ eric@serre:~/sage-src/local/share$ ls aclocal doc iml lrcalc maxima singular cliquer gc info man pari tabset conway_polynomials gcc-4.9.3 jupyter mathjax sage terminfo eric@serre:~/sage-src/local/share$ Best, -Eric On Saturday, May 28, 2016 at 8:04:37 PM UTC-4, vdelecroix wrote: > > The error occurred during the documentation build. You should be able to > start Sage without any problem. > > If it works, try to create some 3d plots and see them (via jmol). > > On 28/05/16 17:35, Eric Larson wrote: > > ...But I can attach a google drive link to the file: > > > > install.log > > < > https://drive.google.com/file/d/0BzxearNxPfAuTGZ3YVFvS0dHN1U/view?usp=drive_web> > > > > > > > > On Sat, May 28, 2016 at 6:29 PM, Eric Larson <elar...@gmail.com > <javascript:>> wrote: > > > >> Hi Dima, > >> > >> Hm... I think most of the issue was that my fresh install of debian 8 > was > >> from the initial release CD, which included a buggy compiler? Because > when > >> I ran system updates, I noticed that one of the things updated was gcc, > and > >> figured I should try recompilation. This time I get a *different* error > >> --- sage itself builds fine, and appears to run fine, unlike last time, > but > >> it was unable to build the documentation: > >> > >> [plot3d ] RuntimeError: Jmol failed to create file > >> '/home/eric/.sage/temp/serre/31647/dir_gUwtRI/preview.png', see > >> '/home/eric/.sage/temp/serre/31647/tmp_xSBzt6.txt' for details > >> Error building the documentation. > >> Traceback (most recent call last): > >> File "/home/eric/sage-src/local/lib/python/runpy.py", line 162, in > >> _run_module_as_main > >> "__main__", fname, loader, pkg_name) > >> File "/home/eric/sage-src/local/lib/python/runpy.py", line 72, in > >> _run_code > >> exec code in run_globals > >> File > >> > "/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py", > > > >> line 2, in <module> > >> main() > >> File > >> > "/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > > >> line 1629, in main > >> builder() > >> File > >> > "/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > > >> line 284, in _wrapper > >> getattr(get_builder(document), 'inventory')(*args, **kwds) > >> File > >> > "/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", > > > >> line 495, in _wrapper > >> x.get(99999) > >> File "/home/eric/sage-src/local/lib/python/multiprocessing/pool.py", > >> line 567, in get > >> raise self._value > >> OSError: [plot3d ] > >> > /home/eric/sage-src/local/lib/python2.7/site-packages/sage/plot/plot3d/platonic.py:docstring > > > >> of sage.plot.plot3d.platonic:10: WARNING: Exception occurred in > plotting > >> platonic-1 > >> > >> Makefile:1003: recipe for target 'doc-html' failed > >> make[2]: *** [doc-html] Error 1 > >> make[2]: Leaving directory '/home/eric/sage-src/build/make' > >> Makefile:826: recipe for target 'all' failed > >> make[1]: *** [all] Error 2 > >> make[1]: Leaving directory '/home/eric/sage-src/build/make' > >> > >> real 314m1.704s > >> user 286m3.212s > >> sys 12m12.704s > >> *************************************************************** > >> Error building Sage. > >> > >> The following package(s) may have failed to build (not necessarily > >> during this run of 'make all'): > >> > >> * documentation: dochtml > >> log file: /home/eric/sage-src/logs/pkgs/../dochtml.log > >> > >> The build directory may contain configuration files and other > potentially > >> helpful information. WARNING: if you now run 'make' again, the build > >> directory will, by default, be deleted. Set the environment variable > >> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. > >> > >> > >> > >> I can't find either file mentioned > >> (/home/eric/sage-src/logs/pkgs/../dochtml.log OR > >> /home/eric/.sage/temp/serre/31647/tmp_xSBzt6.txt) --- I'm not sure how > to > >> expand the former file into a full path (what's the /../?); and the > later > >> file doesn't exist on my system. > >> > >> Also when I try to upload a file here I get an "upload error"... > >> > >> Best, > >> -Eric > >> > >> On Friday, May 27, 2016 at 6:31:59 PM UTC-4, Eric Larson wrote: > >>> > >>> Any suggestions? From /home/eric/sage/logs/pkgs/sagelib-7.2.log (full > log > >>> file attached): > >>> > >>> make[3]: Entering directory '/home/eric/sage/src' > >>> python -u setup.py install > >>> > ************************************************************************ > >>> Traceback (most recent call last): > >>> File "setup.py", line 67, in <module> > >>> include_dirs = sage_include_directories(use_sources=True) > >>> File "/home/eric/sage/src/sage/env.py", line 172, in > >>> sage_include_directories > >>> import os, numpy > >>> File > >>> > "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/__init__.py", > > > >>> line 180, in <module> > >>> from . import add_newdocs > >>> File > >>> > "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/add_newdocs.py", > > > >>> line 13, in <module> > >>> from numpy.lib import add_newdoc > >>> File > >>> > "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/lib/__init__.py", > > > >>> line 8, in <module> > >>> from .type_check import * > >>> File > >>> > "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/lib/type_check.py", > > > >>> line 11, in <module> > >>> import numpy.core.numeric as _nx > >>> File > >>> > "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/core/__init__.py", > > > >>> line 14, in <module> > >>> from . import multiarray > >>> ImportError: libatlas.so.3: cannot open shared object file: No such > file > >>> or directory > >>> > ************************************************************************ > >>> Error building the Sage library > >>> > ************************************************************************ > >>> > >>> -- > >> You received this message because you are subscribed to a topic in the > >> Google Groups "sage-devel" group. > >> To unsubscribe from this topic, visit > >> https://groups.google.com/d/topic/sage-devel/Lz4NjfvjMbg/unsubscribe. > >> To unsubscribe from this group and all its topics, send an email to > >> sage-devel+...@googlegroups.com <javascript:>. > >> To post to this group, send email to sage-...@googlegroups.com > <javascript:>. > >> Visit this group at https://groups.google.com/group/sage-devel. > >> For more options, visit https://groups.google.com/d/optout. > >> > > > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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