Hi Dima,
Hm... I think most of the issue was that my fresh install of debian 8 was
from the initial release CD, which included a buggy compiler? Because when
I ran system updates, I noticed that one of the things updated was gcc, and
figured I should try recompilation. This time I get a *different* error ---
sage itself builds fine, and appears to run fine, unlike last time, but it
was unable to build the documentation:
[plot3d ] RuntimeError: Jmol failed to create file
'/home/eric/.sage/temp/serre/31647/dir_gUwtRI/preview.png', see
'/home/eric/.sage/temp/serre/31647/tmp_xSBzt6.txt' for details
Error building the documentation.
Traceback (most recent call last):
File "/home/eric/sage-src/local/lib/python/runpy.py", line 162, in
_run_module_as_main
"__main__", fname, loader, pkg_name)
File "/home/eric/sage-src/local/lib/python/runpy.py", line 72, in
_run_code
exec code in run_globals
File
"/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py",
line 2, in <module>
main()
File
"/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py",
line 1629, in main
builder()
File
"/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py",
line 284, in _wrapper
getattr(get_builder(document), 'inventory')(*args, **kwds)
File
"/home/eric/sage-src/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py",
line 495, in _wrapper
x.get(99999)
File "/home/eric/sage-src/local/lib/python/multiprocessing/pool.py", line
567, in get
raise self._value
OSError: [plot3d ]
/home/eric/sage-src/local/lib/python2.7/site-packages/sage/plot/plot3d/platonic.py:docstring
of sage.plot.plot3d.platonic:10: WARNING: Exception occurred in plotting
platonic-1
Makefile:1003: recipe for target 'doc-html' failed
make[2]: *** [doc-html] Error 1
make[2]: Leaving directory '/home/eric/sage-src/build/make'
Makefile:826: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/home/eric/sage-src/build/make'
real 314m1.704s
user 286m3.212s
sys 12m12.704s
***************************************************************
Error building Sage.
The following package(s) may have failed to build (not necessarily
during this run of 'make all'):
* documentation: dochtml
log file: /home/eric/sage-src/logs/pkgs/../dochtml.log
The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
I can't find either file mentioned
(/home/eric/sage-src/logs/pkgs/../dochtml.log OR
/home/eric/.sage/temp/serre/31647/tmp_xSBzt6.txt) --- I'm not sure how to
expand the former file into a full path (what's the /../?); and the later
file doesn't exist on my system.
Also when I try to upload a file here I get an "upload error"...
Best,
-Eric
On Friday, May 27, 2016 at 6:31:59 PM UTC-4, Eric Larson wrote:
>
> Any suggestions? From /home/eric/sage/logs/pkgs/sagelib-7.2.log (full log
> file attached):
>
> make[3]: Entering directory '/home/eric/sage/src'
> python -u setup.py install
> ************************************************************************
> Traceback (most recent call last):
> File "setup.py", line 67, in <module>
> include_dirs = sage_include_directories(use_sources=True)
> File "/home/eric/sage/src/sage/env.py", line 172, in
> sage_include_directories
> import os, numpy
> File
> "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/__init__.py",
>
> line 180, in <module>
> from . import add_newdocs
> File
> "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/add_newdocs.py",
>
> line 13, in <module>
> from numpy.lib import add_newdoc
> File
> "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/lib/__init__.py",
>
> line 8, in <module>
> from .type_check import *
> File
> "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/lib/type_check.py",
>
> line 11, in <module>
> import numpy.core.numeric as _nx
> File
> "/home/eric/sage/local/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/core/__init__.py",
>
> line 14, in <module>
> from . import multiarray
> ImportError: libatlas.so.3: cannot open shared object file: No such file
> or directory
> ************************************************************************
> Error building the Sage library
> ************************************************************************
>
>
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