I figured out what the difference was between the class that works and the one that doesn't: nothing! The only difference is that for the class that works I had a leftover "from ... import WorkingFactory" statement at the beginning of my doctest (leftover in that I had put it there before including the factory in the system by which sage loads a bunch of things into the global namespace). So, I just added the command "from ... import MFactory" to the beginning of the doctests that weren't working and all the doctests are now happy. This seems like a bug in the doctesting, no? The doctesting is creating its own separate instance of the factory.
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