I definitely like the new compatible lay-out.

When I looked at 
http://trac.sagemath.org/sage_trac/attachment/ticket/9850/walkthrough.png
my eye spotted some details which leave room for some more
improvement.

1. The grey background of the search button (with the tekst "GO" on
it) should be a darker shade of the "blue/purple" used all over sage
docs.
2. I really like the change of the ugly pale green to pale yellow for
the background of the code blocks. The lines above and below these
boxes however should also change their color, from green to a darker
shade of yellow.
3. Locations like "SAGE_ROOT/blah/blahblah" and "/home/bla/di/
blahblah" have a light grey background which is very similar but not
the same as the pale shade of purple/blue used all over in sage. This
should be exactly the same color, or a significant different color
still fitting the color scheme.
4. The grey lines, (one is right of the navigation bar and the others
are below the section headers) sort of only half fit the color scheme.
I don't think it's very ugly right now, but maybe the darker shade of
purple used in the background on the top of the page, or the color of
the purple line around the search box would fit better.

I think the style issues 1 and 2 really should get adressed. I find 3
and 4 less important because they are less eye catching.

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