You will want to replace /local/jec/sage-4.3.rc0/local/ lib/gcc-lib/i686-pc-linux-gnu/4.0.3/libgcc_s.so.1 with your local version of libgcc_s.so. Alternatively, you can set $SAGE_FORTRAN and $SAGE_FORTRAN_LIB to your system's fortran compiler and library. This is caused by the fortran spkg building its own libgcc, iirc.
On Sat, Dec 12, 2009 at 12:00 AM, John Cremona <john.crem...@gmail.com>wrote: > I reported this before, hoping for some help from a build guru, with > no success, so I'll try again. > > My desktop machine was upgraded over the summer (it's an official > university-supported version of Suse: > cat /proc/version > Linux version 2.6.27.37-0.1-pae (ge...@buildhost) (gcc version 4.3.2 > [gcc-4_3-branch revision 141291] (SUSE Linux) ) #1 SMP 2009-10-15 > 14:56:58 +0200) > > and since then I have not been able to build or run Sage. the build > fails near the end of building R, like this: > > ... > mkdir -p -- ../../../library/base/po > mkdir -p -- ../../../library/base/man > make[6]: Leaving directory > `/local/jec/sage-4.3.rc0/spkg/build/r-2.9.2/src/src/library/base' > /home/masgaj/local/sage-4.3.rc0/spkg/build/r-2.9.2/src/bin/exec/R: > > /local/jec/sage-4.3.rc0/local/lib/gcc-lib/i686-pc-linux-gnu/4.0.3/libgcc_s.so.1: > version `GCC_4.2.0' not found (required by /usr/lib/libstdc++.so.6) > make[5]: *** [all] Error 1 > make[5]: Leaving directory > `/local/jec/sage-4.3.rc0/spkg/build/r-2.9.2/src/src/library/base' > make[4]: *** [R] Error 1 > make[4]: Leaving directory > `/local/jec/sage-4.3.rc0/spkg/build/r-2.9.2/src/src/library' > make[3]: *** [R] Error 1 > make[3]: Leaving directory > `/local/jec/sage-4.3.rc0/spkg/build/r-2.9.2/src/src' > make[2]: *** [R] Error 1 > make[2]: Leaving directory `/local/jec/sage-4.3.rc0/spkg/build/r-2.9.2/src' > Error building R. > > real 1m18.944s > user 0m50.663s > sys 0m20.685s > sage: An error occurred while installing r-2.9.2 > Please email sage-devel http://groups.google.com/group/sage-devel > explaining the problem and send the relevant part of > of /home/masgaj/local/sage-4.3.rc0/install.log. Describe your > computer, operating system, etc. > If you want to try to fix the problem yourself, *don't* just cd to > /home/masgaj/local/sage-4.3.rc0/spkg/build/r-2.9.2 and type 'make'. > Instead type "/home/masgaj/local/sage-4.3.rc0/sage -sh" > in order to set all environment variables correctly, then cd to > /home/masgaj/local/sage-4.3.rc0/spkg/build/r-2.9.2 > (When you are done debugging, you can type "exit" to leave the > subshell.) > make[1]: *** [installed/r-2.9.2] Error 1 > make[1]: Leaving directory `/local/jec/sage-4.3.rc0/spkg' > > real 68m40.725s > user 58m34.888s > sys 7m30.928s > Error building Sage. > > > Here's the gcc version: > > gcc -v > Using built-in specs. > Target: i586-suse-linux > Configured with: ../configure --prefix=/usr --infodir=/usr/share/info > --mandir=/usr/share/man --libdir=/usr/lib --libexecdir=/usr/lib > --enable-languages=c,c++,objc,fortran,obj-c++,java,ada > --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.3 > --enable-ssp --disable-libssp --with-bugurl=http://bugs.opensuse.org/ > --with-pkgversion='SUSE<http://bugs.opensuse.org/%0A--with-pkgversion=%27SUSE>Linux' > --disable-libgcj --disable-libmudflap > --with-slibdir=/lib --with-system-zlib --enable-__cxa_atexit > --enable-libstdcxx-allocator=new --disable-libstdcxx-pch > --enable-version-specific-runtime-libs --program-suffix=-4.3 > --enable-linux-futex --without-system-libunwind --with-cpu=generic > --build=i586-suse-linux > Thread model: posix > gcc version 4.3.2 [gcc-4_3-branch revision 141291] (SUSE Linux) > > The full install log is at > http://www.warwick.ac.uk/staff/J.E.Cremona/install.log.gz > > John > > -- > To post to this group, send an email to sage-devel@googlegroups.com > To unsubscribe from this group, send an email to > sage-devel+unsubscr...@googlegroups.com<sage-devel%2bunsubscr...@googlegroups.com> > For more options, visit this group at > http://groups.google.com/group/sage-devel > URL: http://www.sagemath.org > -- Tim Joseph Dumol <tim (at) timdumol (dot) com> http://timdumol.com -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org
