Hi, I'm convinced this is a javascript issue. When developing pages that include Jmol I use the special package of Jmol specific javascript functions included in the jmol.js file included with Jmol, because each browser has some quirks. As best I can tell this package is not being used by the notebook. This may be the problem. If someone can point me to the code that generates the jmol parts of pages for the notebook, I can take a look. However, I make no promises.
Jonathan a Jmol developer On Dec 26 2008, 10:18 am, Kathy Gerber <kathyma...@gmail.com> wrote: > I am not able to resolve the problems with Jmol. When I view on the > Jmol site, the applet loads and runs fine. Now when I try to do > parametric plot in the references on sagenb.org, I see the black box. > I can right click and manipulate the view, but here is the output of > the java console: > > Jmol applet jmolApplet9__6248650044861166__ destroyed > Jmol applet jmolApplet10__6248650044861166__ initializing > language=en_US > urlImage=jar:http://www.sagenb.org/java/jmol/JmolApplet0.jar!/ > jmol75x29x8.gif > AppletRegistry.checkIn(jmolApplet10__6248650044861166__) > (C) 2008 Jmol Development > Jmol Version 11.6.RC8 2008-08-14 22:55 > java.vendor:Sun Microsystems Inc. > java.version:1.6.0_07 > os.name:Windows XP > memory:24.1/33.4 > useCommandThread: false > appletId:jmolApplet10__6248650044861166__ > appletDocumentBase=http://www.sagenb.org/doc/live/ref/module- > sage.plot.plot3d.parametric-plot3d.html > appletCodeBase=http://www.sagenb.org/java/jmol/ > popup menu not available > defaults = "Jmol" > backgroundColor = "black" > FileManager > openinghttp://www.sagenb.org/home/_sage_/1469/cells/36/sage0-size500.jmol?3 > FileManager > openinghttp://www.sagenb.org/doc/live/ref/sage0-size500-562242044.jmol.zip > script ERROR: io error > readinghttp://www.sagenb.org/doc/live/ref/sage0-size500-562242044.jmol.zip|SCRIPT: > java.io.FileNotFoundException:http://www.sagenb.org/doc/live/ref/sage0-size500-562242044.jmol.zip > eval ERROR: > ----line 2 command 2 of file /home/_sage_/1469/cells/36/sage0- > size500.jmol?3: > script >> "SCRIPT" << > ----line 1 command 1 of file null: > script >> "/home/_sage_/1469/cells/36/sage0-size500.jmol?3" > << > ================================== > I've had worse luck running locally. I've tried compiling on FC10, > and the libraries from the Sun JRE were needed. After going through > the Sun JRE process, a new set of sage compile errors had to do with > missing ant. > > I hope this is of some help in isolating the problem. I've tried > several browsers on several platforms, and generally can use sage and > can use jmol applets, but cannot use jmol applets via sage. > > Kathy Gerber > > On Dec 13, 6:09 pm, Jaap Spies <j.sp...@hccnet.nl> wrote: > > > Jonathan wrote: > > > Hi Jonathan, > > > > As aJmoldeveloper and probable user ofSagefor my classes, I/we > > > definitely would like to help. I've done a little investigating on a > > >Sageinstallation on my computer running MacOS 11.4.11. I can > > > reproduce the problem, but it is not showing up the way I expect in > > > the page source generated by theSageserver. What I see is that not > > > everything is showing up in the page source in FF. Is there something > > > different about the way you package things for FF versus other > > > browsers? Here's what I see: > > > I hope this will work out on Fedora too! > > > What I see is grey squares, for instance > > in:http://www.math.ubc.ca/~mcleane/jmoltest/simple.htm > > with FF-3.0.4 with Java plugin 1.6.0_06 > > > FromSagethe same grey squares! > > > Jaap --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to sage-devel-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---
