On Sat, Apr 5, 2008 at 8:51 AM, mabshoff
<[EMAIL PROTECTED]> wrote:
>
>
>
>
> On Apr 5, 5:43 pm, "David Joyner" <[EMAIL PROTECTED]> wrote:
> > I got a compilation error on a macbook with OS10.4. However, it was
> > trying to compile a
> > version loaded on a firewire external drive, which may be the issue.
> > Anyway, the problem was with linbox and here is the tail:
> >
> > ld: multiple definitions of symbol __ZN6LinBox11commentatorE
> > .libs/linbox_wrap.o definition of __ZN6LinBox11commentatorE in section
> > (__DATA,__common)
> >
> /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/lib/liblinbox.dylib(single
> > module) definition of __ZN6LinBox11commentatorE
> > /usr/bin/libtool: internal link edit command failed
> > make[2]: *** [liblinboxwrap.la] Error 1
> > Error building linboxwrap
> > /bin/sh ./libtool --tag=CXX --mode=link g++ -g -fPIC
> > -I"/Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/include"
> > -I"/Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/include/linbox"
> > -L"/Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/lib"
> > -version-info 0:0:0 -o liblinboxwrap.la -rpath
> > /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/lib
> > linbox_wrap.lo -llinbox /usr/lib/libcblas.dylib
> > g++ -dynamiclib -single_module ${wl}-flat_namespace ${wl}-undefined
> > ${wl}suppress -o .libs/liblinboxwrap.0.0.0.dylib .libs/linbox_wrap.o
> > -L/Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/lib
> > /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/lib/liblinbox.dylib
> > -install_name
> >
> /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/lib/liblinboxwrap.0.dylib
> > -Wl,-compatibility_version -Wl,1 -Wl,-current_version -Wl,1.0
> > ld: multiple definitions of symbol __ZN6LinBox11commentatorE
> > .libs/linbox_wrap.o definition of __ZN6LinBox11commentatorE in section
> > (__DATA,__common)
> >
> /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/local/lib/liblinbox.dylib(single
> > module) definition of __ZN6LinBox11commentatorE
> > /usr/bin/libtool: internal link edit command failed
> > make[2]: *** [liblinboxwrap.la] Error 1
> > Error installing linboxwrap
> >
> > real 1m54.803s
> > user 1m8.964s
> > sys 0m38.311s
> > sage: An error occurred while installing linbox-1.1.5
> > Please email sage-develhttp://groups.google.com/group/sage-devel
>
> > explaining the problem and send the relevant part of
> > of /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/install.log.
> > Describe your computer, operating system, etc.
> > If you want to try to fix the problem, yourself *don't* just cd to
> > /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/spkg/build/linbox-1.1.5
> > and type 'make'.
> > Instead type "/Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/sage -sh"
> > in order to set all environment variables correctly, then cd to
> > /Volumes/G-DRIVE-MINI/sagestuff/sage-3.0.alpha1/spkg/build/linbox-1.1.5
> > (When you are done debugging, you can type "exit" to leave the
> > subshell.)
> > make[1]: *** [installed/linbox-1.1.5] Error 1
> >
> > real 45m39.810s
> > user 27m31.617s
> > sys 15m37.378s
> >
>
> Hi David,
>
> that is exactly the failure I mentioned above. William did have some
> patch that disabled the commentator since we do not use it. Clement is
> on a plane right now and William doesn't seem to be online yet, so we
> will likely look at this during Bug Day 11.
I don't personally know about any commentator / linbox problems.
Sage-3.0.alpha1 *built* fine on all supported Sage platforms.
There are however a *lot* of misc doctest failures all over the map on PowerPC:
{{{
sage -t devel/sage/sage/rings/complex_double.pyx
**********************************************
************************
File "/Users/was/build/sage-3.0.alpha1/tmp/complex_double.py", line 179:
sage: CDF.random_element()
Expected:
-0.436810529675 + 0.736945423566*I
Got:
0.736945423566 - 0.436810529675*I
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/complex_double.py", line 181:
sage: CDF.random_element(-10,10,-10,10)
Expected:
-7.08874026302 - 9.54135400334*I
Got:
-9.54135400334 - 7.08874026302*I
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/complex_double.py", line 183:
sage: CDF.random_element(-10^20,10^20,-2,2)
Expected:
-7.58765473764e+19 + 0.925549022839*I
Got:
4.62774511419e+19 - 1.51753094753*I
**********************************************************************
1 items had failures:
3 of 4 in __main__.example_7
***Test Failed*** 3 failures.
}}}
This is not technically an error, but looks dumb:
{{{
sage -t devel/sage/sage/plot/animate.py dyld:
Library not loaded: /usr/local/lib/libfr
eetype6.dylib
Referenced from: /usr/local/bin/convert
Reason: image not found
sh: line 1: 67750 Trace/BPT trap convert -delay 20 -loop 0
*.png "/Users/was/build/sage-3.0.alpha
1/sage0.gif"
[12.6 s]
}}}
For this, we need to speed up homspace or increase the timeout, or
mark some doctests #long:
{{{
sage -t devel/sage/sage/modular/abvar/homspace.py *** ***
Error: TIMED OUT! *** ***
*** *** Error: TIMED OUT! *** ***
[369.2 s]
}}}
The new randstate stuff is massively broken on ppc, evidently:
{{{
sage -t devel/sage/sage/misc/randstate.pyx
**********************************************
************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 47:
: rtest()
Expected:
(303, -0.187141682737491, 1/2*x^2 - 1/95*x - 1/2, (1,2),
1698070399, 8045, 0.96619117347084138)
Got:
(303, -0.187141682737491, 1/2*x^2 - 1/95*x - 1/2, (1,2)(4,5),
1698070399, 8045, 0.96619117347084138)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 50:
: rtest()
Expected:
(978, 0.184109262667515, -3*x^2 - 1/12, (2,3), 1046254370, 60359,
0.83350776541997362)
Got:
(978, 0.184109262667515, -3*x^2 - 1/12, (1,2,3), 1046254370,
60359, 0.83350776541997362)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 53:
: rtest()
Expected:
(207, 0.505364206568040, 4*x^2 + 1/2, (1,2)(4,5), 2137873234,
27695, 0.19982565117278328)
Got:
(207, 0.505364206568040, 4*x^2 + 1/2, (4,5), 2137873234, 27695,
0.19982565117278328)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 56:
: rtest()
Expected:
(303, -0.187141682737491, 1/2*x^2 - 1/95*x - 1/2, (1,2),
1698070399, 8045, 0.96619117347084138)
Got:
(303, -0.187141682737491, 1/2*x^2 - 1/95*x - 1/2, (1,2)(4,5),
1698070399, 8045, 0.96619117347084138)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 59:
: rtest()
Expected:
(978, 0.184109262667515, -3*x^2 - 1/12, (2,3), 1046254370, 60359,
0.83350776541997362)
Got:
(978, 0.184109262667515, -3*x^2 - 1/12, (1,2,3), 1046254370,
60359, 0.83350776541997362)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 62:
: rtest()
Expected:
(207, 0.505364206568040, 4*x^2 + 1/2, (1,2)(4,5), 2137873234,
27695, 0.19982565117278328)
Got:
(207, 0.505364206568040, 4*x^2 + 1/2, (4,5), 2137873234, 27695,
0.19982565117278328)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 72:
: rtest()
Expected:
(720, 0.0216737401150802, x^2 - x, (), 1506569166, 14005,
0.92053315995181839)
Got:
(720, 0.0216737401150802, x^2 - x, (1,3,2)(4,5), 1506569166,
14005, 0.92053315995181839)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 206:
: r1 = rtest(); r1
Expected:
(303, -0.187141682737491, 1/2*x^2 - 1/95*x - 1/2, (1,2),
1698070399, 8045, 0.96619117347084138)
Got:
(303, -0.187141682737491, 1/2*x^2 - 1/95*x - 1/2, (1,2)(4,5),
1698070399, 8045, 0.96619117347084138)
**********************************************************************
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 208:
: r2 = rtest(); r2
Expected:
(105, -0.581229341007821, -x^2 - x - 6, (1,3,2)(4,5), 697338742,
1271, 0.001767155077382232)
Got:
(105, -0.581229341007821, -x^2 - x - 6, (2,3), 697338742, 1271,
0.001767155077382232)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 216:
: with seed(1): rtest()
Expected:
(978, 0.184109262667515, -3*x^2 - 1/12, (2,3), 1046254370, 60359,
0.83350776541997362)
Got:
(978, 0.184109262667515, -3*x^2 - 1/12, (1,2,3), 1046254370,
60359, 0.83350776541997362)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 218:
: r2m = rtest(); r2m
Expected:
(105, -0.581229341007821, -x^2 - x - 6, (1,3,2)(4,5), 697338742,
19769, 0.001767155077382232)
Got:
(105, -0.581229341007821, -x^2 - x - 6, (2,3), 697338742, 19769,
0.001767155077382232)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 233:
: with seed(1): (rtest(), rtest())
Expected:
((978, 0.184109262667515, -3*x^2 - 1/12, (2,3), 1046254370, 60359,
0.83350776541997362), (138, -0.2475
78366457583, 2*x - 24, (), 1077419109, 10234, 0.0033332230808060803))
Got:
((978, 0.184109262667515, -3*x^2 - 1/12, (1,2,3), 1046254370,
60359, 0.83350776541997362), (138, -0.24
7578366457583, 2*x - 24, (4,5), 1077419109, 10234, 0.0033332230808060803))
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 248:
: try:
ctx.__enter__()
rtest()
finally:
ctx.__exit__(None, None, None)
Expected:
<sage.misc.randstate.randstate object at 0x...>
(978, 0.184109262667515, -3*x^2 - 1/12, (2,3), 1046254370, 60359,
0.83350776541997362)
False
Got:
<sage.misc.randstate.randstate object at 0x6e258a0>
(978, 0.184109262667515, -3*x^2 - 1/12, (1,2,3), 1046254370,
60359, 0.83350776541997362)
False
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/randstate.py", line 629:
sage: gap.Random(1, 10^50)
Expected:
24922966241004817547714978350347109473543873184564
Got:
97144566318213989637952954803537490912828430192472
**********************************************************************
2 items had failures:
13 of 60 in __main__.example_0
1 of 4 in __main__.example_10
***Test Failed*** 14 failures.
For whitespace errors, see the file
/Users/was/build/sage-3.0.alpha1/tmp/.doctest_randstate.py
[19.4 s]
}}}
inline_fortran is broken here too:
{{{
sage -t devel/sage/sage/misc/inline_fortran.py
**********************************************
************************
File "/Users/was/build/sage-3.0.alpha1/tmp/inline_fortran.py", line 28:
sage: test_fortran(s) # -- requires fortran
Expected nothing
Got:
Found executable /Users/was/build/sage-3.0.alpha1/local/bin/sage-g77_shared
Found executable /Users/was/build/sage-3.0.alpha1/local/bin/sage_fortran
Found executable /usr/bin/ld
Found executable /usr/bin/ar
Found executable /usr/bin/ranlib
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c: In
function ?fortran_doc?:
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:123:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:125:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:129:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:131:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c: In
function ?array_from_pyobj?:
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:540:
warning: format ?%d? expects type ?int?, b
ut argument 3 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c: In
function ?check_and_fix_dimensions?:
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:703:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:703:
warning: format ?%d? expects type ?int?, b
ut argument 5 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:716:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:729:
warning: format ?%d? expects type ?int?, b
ut argument 3 has type ?npy_intp?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:729:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?npy_intp?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:741:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:741:
warning: format ?%d? expects type ?int?, b
ut argument 5 has type ?npy_intp?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:769:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?long int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:769:
warning: format ?%d? expects type ?int?, b
ut argument 5 has type ?npy_intp?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:787:
warning: format ?%d? expects type ?int?, b
ut argument 3 has type ?npy_intp?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:787:
warning: format ?%d? expects type ?int?, b
ut argument 4 has type ?npy_intp?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:788:
warning: format ?%d? expects type ?int?, but argument 3 has type ?long
int?
/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5/fortranobject.c:790:
warning: format ?%d? expects type ?int?, but argument 3 has type ?long
int?
Using built-in specs.
Target:
Configured with: ../configure --enable-languages=c
Thread model: posix
gcc version 4.0.3 (g95 0.91!) Jun 4 2007
/Users/was/build/sage-3.0.alpha1/local/bin/../lib/gcc-lib/powerpc-apple-darwin6.8/4.0.3//f951
/Users/was/.sage//temp/fermat.math.harvard.edu/62304//tmp_0.f -fPIC
-quiet -dumpbase tmp_0.f -auxbase-strip
/tmp/tmpmoChbe/Users/was/.sage/temp/fermat.math.harvard.edu/62304/tmp_0.o
-O -version -fPIC -ffixed-form -fno-second-underscore
-I/tmp/tmpmoChbe/src.macosx-10.3-ppc-2.5
-I/Users/was/build/sage-3.0.alpha1/local/lib/python/site-packages/numpy/core/include
-I/Users/was/build/sage-3.0.alpha1/local/include/python2.5 -o
/var/tmp//cc039wZf.s
G95 Fortran 95 version 4.0.3 (g95 0.91!) Jun 4 2007
(powerpc-apple-darwin6.8)
compiled by GNU C version 3.1 20020420 (prerelease).
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
as -arch ppc -o
/tmp/tmpmoChbe/Users/was/.sage/temp/fermat.math.harvard.edu/62304/tmp_0.o
/var/tmp//cc039wZf.s
<BLANKLINE>
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/inline_fortran.py", line 31:
sage: fib(n,int(10)) # -- requires fortran
Exception raised:
Traceback (most recent call last):
File "/Users/was/build/sage-3.0.alpha1/local/lib/python2.5/doctest.py",
line 1212, in __run
compileflags, 1) in test.globs
File "<doctest __main__.example_0[7]>", line 1, in <module>
fib(n,int(Integer(10))) # -- requires fortran###line 31:
sage: fib(n,int(10)) # -- requires fortran
NameError: name 'fib' is not defined
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/inline_fortran.py", line 32:
sage: n # -- requires fortran
Expected:
array([ 0., 1., 1., 2., 3., 5., 8., 13., 21., 34.])
Got:
array([ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9.])
**********************************************************************
1 items had failures:
3 of 9 in __main__.example_0
***Test Failed*** 3 failures.
For whitespace errors, see the file
/Users/was/build/sage-3.0.alpha1/tmp/.doctest_inline_fortran.py
}}}
More stuff probably related to random stuff.
{{{
[16.6 s]sage -t devel/sage/sage/groups/perm_gps/permgroup.py
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/permgroup.py", line 709:
sage: G.random_element()
Expected:
(1,2)(4,5)
Got: (2,3)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/permgroup.py", line 1270:
sage: g = G.random_element(); g
Expected:
(1,3)
Got:
(1,2)(3,4)
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/permgroup.py", line 1272:
sage: G.normalizer(g)
Expected:
Group( [ (1,3), (2,4) ] )
Got:
Group( [ (1,2)(3,4), (1,4)(2,3) ] )
**********************************************************************
2 items had failures:
1 of 3 in __main__.example_22
2 of 6 in __main__.example_39
***Test Failed*** 3 failures.
For whitespace errors, see the file
/Users/was/build/sage-3.0.alpha1/tmp/.doctest_permgroup.py
[19.1 s]
}}}
No clue:
{{{
sage -t devel/sage/sage/groups/matrix_gps/unitary.py
**********************************************
************************
File "/Users/was/build/sage-3.0.alpha1/tmp/unitary.py", line 21:
sage: G.random()
Expected:
[ 3*a 2*a 4*a + 3]
[ 3 2*a + 4 3*a]
[4*a + 1 4*a + 1 3*a + 2]
Got:
[ 4 2*a + 4 2*a]
[3*a + 3 a + 1 a + 3]
[2*a + 2 a + 1 3*a + 1]
**********************************************************************
1 items had failures:
1 of 8 in __main__.example_0
***Test Failed*** 1 failures.
}}}
{{{
sage -t devel/sage/sage/groups/matrix_gps/symplectic.py
**********************************************
************************
File "/Users/was/build/sage-3.0.alpha1/tmp/symplectic.py", line 14:
sage: G.random()
Expected:
[1 0 5 6]
[0 5 2 4]
[4 0 2 3]
[3 6 2 0]
Got:
[4 6 2 0]
[2 5 4 0]
[3 3 5 1]
[2 0 5 5]
**********************************************************************
1 items had failures:
1 of 6 in __main__.example_0
***Test Failed*** 1 failures.
For whitespace errors, see the file
/Users/was/build/sage-3.0.alpha1/tmp/.doctest_symplectic.py
[7.0 s]
}}}
{{{
File "/Users/was/build/sage-3.0.alpha1/tmp/orthogonal.py", line 212:
sage: GO( 3, GF(7), 0).random()
Expected:
[3 2 1]
[4 0 0]
[6 0 1]Got:
[1 5 3]
[0 1 0]
[0 6 6]
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/orthogonal.py", line 120:
sage: G.random()
Expected:
[2 5 1 1]
[3 0 0 0]
[0 0 3 5]
[2 0 4 4]
Got:
[3 4 5 2]
[1 5 2 5]
[6 4 6 2]
[2 6 4 2]
**********************************************************************
2 items had failures:
1 of 4 in __main__.example_10
1 of 4 in __main__.example_4
***Test Failed*** 2 failures.
For whitespace errors, see the file
/Users/was/build/sage-3.0.alpha1/tmp/.doctest_orthogonal.py
[7.9 s]
sage -t devel/sage/sage/groups/matrix_gps/special_linear.py
}}}
{{{
sage -t devel/sage/sage/groups/matrix_gps/matrix_group.py
**********************************************
************************ File
"/Users/was/build/sage-3.0.alpha1/tmp/matrix_group.py", line 448:
sage: G.random()Expected: [2 1 1 1] [1 0 2 1]
[0 1 1 0]
[1 0 0 1]
Got:
[1 1 0 1] [2 1 1 1]
[1 2 1 0]
[1 1 2 0]
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/matrix_group.py", line 457:
sage: G.random()
Expected:
[1 3]
[0 3]
Got:
[2 3]
[0 1]
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/matrix_group.py", line 460:
sage: G.random()
Expected:
[2 2]
[1 0]
Got:
[4 1]
[1 2]
**********************************************************************
File "/Users/was/build/sage-3.0.alpha1/tmp/matrix_group.py", line 463:
sage: G.random()
Expected:
[4 0]
[1 4]
Got:
[4 4]
[2 0]
**********************************************************************
1 items had failures:
4 of 9 in __main__.example_17
***Test Failed*** 4 failures.
}}}
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