I was able to install SageMath and get it running. Thank you very much for all of your help. On Friday, February 9, 2024 at 12:38:29 AM UTC-6 Matthias Koeppe wrote:
> In the terminal output, it looks like you are installing sagemath-standard > 10.2 in an environment with sage-conf 10.3.beta7. Try forcing > sagemath-standard==10.3.beta7 (or use the switch "--pre" with pip install). > > (In https://github.com/sagemath/sage/pull/37261 I am updating the > instructions; you may want to take a look.) > > > On Thursday, February 8, 2024 at 4:23:24 PM UTC-8 Sai Chandhrasekhar wrote: > >> I got rid of that error message but I still get a failure to build the >> wheel for sagemath-standard. Here's the terminal output I got: >> >> >> On Thursday, February 8, 2024 at 4:43:46 PM UTC-6 Matthias Koeppe wrote: >> >>> You can try if 'export MAKE="make -j4"' fixes this >>> >>> On Thursday, February 8, 2024 at 1:21:32 PM UTC-8 Sai Chandhrasekhar >>> wrote: >>> >>>> When running python3 -m pip install --no-build-isolation >>>> sagemath-standard I got this error message: >>>> >>>> clang -bundle -undefined dynamic_lookup -g >>>> -L/Users/user/.sage/sage-10.3.beta7-Darwin-x86_64/local/lib >>>> -Wl,-rpath,/Users/user/.sage/sage-10.3.beta7-Darwin-x86_64/local/lib >>>> build/temp.macosx-10.9-universal2-cpython-311/build/cythonized/sage/monoids/free_abelian_monoid_element.o >>>> >>>> -lgmp -o build/lib.macosx-10.9-universal2-cpython-311/sage/monoids/ >>>> free_abelian_monoid_element.cpython-311-darwin.so -lpari >>>> >>>> error: command '/usr/bin/clang' failed with exit code 1 >>>> >>>> Exception ignored in: <function Pool.__del__ at 0x11ce2dee0> >>>> >>>> Traceback (most recent call last): >>>> >>>> File >>>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", >>>> >>>> line 271, in __del__ >>>> >>>> self._change_notifier.put(None) >>>> >>>> File >>>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/queues.py", >>>> >>>> line 377, in put >>>> >>>> self._writer.send_bytes(obj) >>>> >>>> File >>>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", >>>> >>>> line 199, in send_bytes >>>> >>>> self._send_bytes(m[offset:offset + size]) >>>> >>>> File >>>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", >>>> >>>> line 410, in _send_bytes >>>> >>>> self._send(header + buf) >>>> >>>> File >>>> "/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", >>>> >>>> line 367, in _send >>>> >>>> n = write(self._handle, buf) >>>> >>>> ^^^^^^^^^^^^^^^^^^^^^^^^ >>>> >>>> OSError: [Errno 9] Bad file descriptor >>>> >>>> On Thursday, February 8, 2024 at 1:46:26 PM UTC-6 Sai Chandhrasekhar >>>> wrote: >>>> >>>>> I was able to get it to work. I found out I added the wrong location >>>>> to PATH. I fixed it and got the command to work. >>>>> >>>>> On Thursday, February 8, 2024 at 1:00:52 PM UTC-6 Sai Chandhrasekhar >>>>> wrote: >>>>> >>>>>> I did get a warning about that and added it to my PATH before running >>>>>> the command, but I still got the result. I did what you suggested and >>>>>> still >>>>>> got the same error message. >>>>>> >>>>>> On Thursday, February 8, 2024 at 12:27:29 PM UTC-6 Matthias Koeppe >>>>>> wrote: >>>>>> >>>>>>> That's great progress. >>>>>>> >>>>>>> Did pip issue any warnings when you installed sage_conf? >>>>>>> In particular, it may have warned that the installation location for >>>>>>> scripts is not in your PATH. >>>>>>> If so, you can fix it as follows: >>>>>>> >>>>>>> export PATH="$(python3 -c 'import sysconfig; >>>>>>> print(sysconfig.get_path("scripts", "posix_user"))'):$PATH" >>>>>>> >>>>>>> On Thursday, February 8, 2024 at 8:38:27 AM UTC-8 Sai Chandhrasekhar >>>>>>> wrote: >>>>>>> >>>>>>>> I was able to install sage_conf successfully, but when I run, >>>>>>>> "python3 -m pip install $(sage-config SAGE_SPKG_WHEELS)/*.whl >>>>>>>> sage_setup", >>>>>>>> I get the following error messages: >>>>>>>> >>>>>>>> zsh: command not found: sage-config >>>>>>>> >>>>>>>> zsh: no matches found: /*.whl >>>>>>>> >>>>>>>> On Wednesday, February 7, 2024 at 3:13:27 PM UTC-6 Matthias Koeppe >>>>>>>> wrote: >>>>>>>> >>>>>>>>> To start from scratch in this mode of installation, you will need >>>>>>>>> to remove the directory >>>>>>>>> "/Users/user/.sage/sage-10.3.beta7-Darwin-x86_64/" >>>>>>>>> >>>>>>>>> On Wednesday, February 7, 2024 at 12:10:21 PM UTC-8 Sai >>>>>>>>> Chandhrasekhar wrote: >>>>>>>>> >>>>>>>>>> I am still getting the same error. In the config.log files, I see >>>>>>>>>> this: x86_64-apple-darwin13.4.0-clang: command not found. I have >>>>>>>>>> tried >>>>>>>>>> uninstalling and reinstalling Xcode and the Xcode command line >>>>>>>>>> tools, but I >>>>>>>>>> still get the same result. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On Wednesday, February 7, 2024 at 11:06:12 AM UTC-6 Matthias >>>>>>>>>> Koeppe wrote: >>>>>>>>>> >>>>>>>>>>> Thanks for sharing these logs. >>>>>>>>>>> The key failure is here: >>>>>>>>>>> >>>>>>>>>>> configure:3938: x86_64-apple-darwin13.4.0-clang -march=core2 >>>>>>>>>>> -mtune=haswell -mssse3 -ftree-vectorize -fPIC >>>>>>>>>>> -fstack-protector-strong -O2 >>>>>>>>>>> -pipe -isystem /Users/user/anaconda3/include -D_FORTIFY_SOURCE=2 >>>>>>>>>>> -isystem >>>>>>>>>>> /Users/user/anaconda3/include >>>>>>>>>>> -L/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>>> -Wl,-ld_classic,-rpath,/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>>> >>>>>>>>>>> -L/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>>> -Wl,-ld_classic,-rpath,/Users/user/.sage/sage-10.2-Darwin-x86_64/local/lib >>>>>>>>>>> >>>>>>>>>>> -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs >>>>>>>>>>> -Wl,-rpath,/Users/user/anaconda3/lib -L/Users/user/anaconda3/lib >>>>>>>>>>> conftest.c >>>>>>>>>>> >&5 >>>>>>>>>>> ld: library not found for -ld_classic >>>>>>>>>>> clang-16: error: linker command failed with exit code 1 (use -v >>>>>>>>>>> to see invocation) >>>>>>>>>>> >>>>>>>>>>> What's happening here is that a workaround that we use on macOS >>>>>>>>>>> for compilation with XCode is incompatible with the conda toolchain. >>>>>>>>>>> I have a fix for this in >>>>>>>>>>> https://github.com/sagemath/sage/pull/37237 >>>>>>>>>>> >>>>>>>>>>> For now, if you want to use the installation method using "pip >>>>>>>>>>> install sage_conf", deactivate conda first. >>>>>>>>>>> Or alternatively if you want to use conda, use one of the >>>>>>>>>>> installation methods described in >>>>>>>>>>> https://doc.sagemath.org/html/en/installation/conda.html >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> On Tuesday, February 6, 2024 at 4:10:53 PM UTC-8 Sai >>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>> >>>>>>>>>>>> I also tried to run the install command again with the --pre >>>>>>>>>>>> flag and got the same result. >>>>>>>>>>>> >>>>>>>>>>>> On Tuesday, February 6, 2024 at 5:54:11 PM UTC-6 Sai >>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>> >>>>>>>>>>>>> On Tuesday, February 6, 2024 at 5:14:56 PM UTC-6 Matthias >>>>>>>>>>>>> Koeppe wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> >>>>>>>>>>>>>> and >>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/libatomic_ops-7.8.0/src/config.log >>>>>>>>>>>>>> >>>>>>>>>>>>>> please >>>>>>>>>>>>>> >>>>>>>>>>>>>> On Tuesday, February 6, 2024 at 2:36:21 PM UTC-8 Sai >>>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>>> >>>>>>>>>>>>>>> On Tuesday, February 6, 2024 at 4:22:59 PM UTC-6 Matthias >>>>>>>>>>>>>>> Koeppe wrote: >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> Could you post one of these log files please? For example >>>>>>>>>>>>>>>> info-6.8.log >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> And could you try "python3 -m pip install --pre sage_conf" >>>>>>>>>>>>>>>> also? >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>> On Tuesday, February 6, 2024 at 12:15:08 PM UTC-8 Sai >>>>>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> When I ran python3 -m pip install sage_conf I got this >>>>>>>>>>>>>>>>> error message: >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> Error building Sage. >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> The following package(s) may have failed to build >>>>>>>>>>>>>>>>> (not necessarily >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> during this run of 'make all-build'): >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: gf2x-1.3.0 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/gf2x-1.3.0.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/gf2x-1.3.0 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: cddlib-0.94m >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/cddlib-0.94m.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/cddlib-0.94m >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: cliquer-1.22 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/cliquer-1.22.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/cliquer-1.22 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: libatomic_ops-7.8.0 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/libatomic_ops-7.8.0.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/libatomic_ops-7.8.0 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: m4ri-20200115 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/m4ri-20200115.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/m4ri-20200115 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: ecm-7.0.5 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/ecm-7.0.5.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/ecm-7.0.5 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: info-6.8 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:07 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/info-6.8.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/info-6.8 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> * package: pari-2.15.4 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> last build time: Feb 6 14:08 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> log file: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/logs/pkgs/pari-2.15.4.log >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> build directory: >>>>>>>>>>>>>>>>> /Users/user/.sage/sage-10.2-Darwin-x86_64/local/var/tmp/sage/build/pari-2.15.4 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> For those packages the following error message was printed >>>>>>>>>>>>>>>>> earlier: >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> configure: error: C compiler cannot create executables >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>> On Tuesday, February 6, 2024 at 2:01:03 PM UTC-6 Matthias >>>>>>>>>>>>>>>>> Koeppe wrote: >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> According to your config.log, the run of "configure" >>>>>>>>>>>>>>>>>> succeeded. >>>>>>>>>>>>>>>>>> That config.log contains error messages from various >>>>>>>>>>>>>>>>>> compiler invocations is a normal part of the configure >>>>>>>>>>>>>>>>>> process. >>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> What is the actual problem that you encountered? >>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> On Monday, February 5, 2024 at 2:58:36 PM UTC-8 Sai >>>>>>>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> On Monday, February 5, 2024 at 4:48:08 PM UTC-6 Dima >>>>>>>>>>>>>>>>>>> Pasechnik wrote: >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>> On 5 February 2024 21:58:54 GMT, "dan...@gmail.com" < >>>>>>>>>>>>>>>>>>>> dan...@gmail.com> wrote: >>>>>>>>>>>>>>>>>>>> >You could just use Sage_macOS >>>>>>>>>>>>>>>>>>>> >< >>>>>>>>>>>>>>>>>>>> https://github.com/3-manifolds/Sage_macOS/releases/tag/v2.2.0>, >>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>> quick and >>>>>>>>>>>>>>>>>>>> >easy! >>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>> for Sage development, you need a source install. >>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>> >On Monday, February 5, 2024 at 3:49:02 PM UTC-6 >>>>>>>>>>>>>>>>>>>> Matthias Koeppe wrote: >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>> >> We would need to see the full logs >>>>>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>>>>> >> On Monday, February 5, 2024 at 1:26:31 PM UTC-8 Sai >>>>>>>>>>>>>>>>>>>> Chandhrasekhar wrote: >>>>>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>>>>> >>> Hello, >>>>>>>>>>>>>>>>>>>> >>> >>>>>>>>>>>>>>>>>>>> >>> When I tried to run python3 -m pip install >>>>>>>>>>>>>>>>>>>> sage_conf, I got this error >>>>>>>>>>>>>>>>>>>> >>> message from config.log. I tried to change to GCC >>>>>>>>>>>>>>>>>>>> but then I got a message >>>>>>>>>>>>>>>>>>>> >>> that Sage cannot be built on macOS with GNU's gcc. >>>>>>>>>>>>>>>>>>>> Any suggestions on what >>>>>>>>>>>>>>>>>>>> >>> to do would be appreciated. >>>>>>>>>>>>>>>>>>>> >>> configure:6595: x86_64-apple-darwin13.4.0-clang -V >>>>>>>>>>>>>>>>>>>> >&5 >>>>>>>>>>>>>>>>>>>> >>> clang-16: error: argument to '-V' is missing >>>>>>>>>>>>>>>>>>>> (expected 1 value) >>>>>>>>>>>>>>>>>>>> >>> clang-16: error: no input files >>>>>>>>>>>>>>>>>>>> >>> configure:6606: $? = 1 >>>>>>>>>>>>>>>>>>>> >>> configure:6595: x86_64-apple-darwin13.4.0-clang >>>>>>>>>>>>>>>>>>>> -qversion >&5 >>>>>>>>>>>>>>>>>>>> >>> clang-16: error: unknown argument '-qversion'; did >>>>>>>>>>>>>>>>>>>> you mean '--version'? >>>>>>>>>>>>>>>>>>>> >>> clang-16: error: no input files >>>>>>>>>>>>>>>>>>>> >>> configure:6606: $? = 1 >>>>>>>>>>>>>>>>>>>> >>> configure:6595: x86_64-apple-darwin13.4.0-clang >>>>>>>>>>>>>>>>>>>> -version >&5 >>>>>>>>>>>>>>>>>>>> >>> clang-16: error: unknown argument '-version'; did >>>>>>>>>>>>>>>>>>>> you mean '--version'? >>>>>>>>>>>>>>>>>>>> >>> clang-16: error: no input files >>>>>>>>>>>>>>>>>>>> >>> >>>>>>>>>>>>>>>>>>>> >> >>>>>>>>>>>>>>>>>>>> > >>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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