Hi, I am sorry that I could not get back to you sooner. Thanks for reminding me the problems of WSL and the vintage of my machine.
Best regards, phi On Sunday, November 27, 2022 at 11:56:06 AM UTC-5 dim...@gmail.com wrote: > On Sun, Nov 27, 2022 at 8:10 AM being nobody00 <beingn...@gmail.com> > wrote: > > > > > What OS? > > $ uname -a > > Linux PC1 4.4.0-17763-Microsoft #2268-Microsoft Thu Oct 07 16:36:00 PST > 2021 x86_64 x86_64 x86_64 GNU/Linux > > > > this is a guest OS of WSL, as far as I know, and very old one (4+ > y.o., and unsupported since early 2022, as far as Linux kernels go). > Probably your WSL is old, too. > > Problably /mnt/g is (from yur Linux point of view) a filesystem of > different to /home's type type, > and the hell breaks loose there (old WSL versions were known to > operate quite badly across > different filesystems, not sure if that improved) > > > Please find appended below excerpts from 'config.log' and > 'scipy-1.9.2.log'. > > Maybe this is newly introduced after > https://trac.sagemath.org/ticket/34658? > > > > FWIW, beta 4 was successfully built with the default prefix (aka root?): > > > > ./configure > > > > It is hoped that 'non-default-config.log', 'non-default-scipy-1.9.2.log' > and 'default-scipy-1.9.2.log' in the 'report.b4.0.7z' (attached in the > original post) were investigated. > > > > 'non-default' here means: > > > > $ ./configure --prefix=/mnt/g/Maths/sage-9.8/b4.0 > > > > Please advise if there are any other data is needed for the > investigation. > > > > Best regards, > > > > phi > > > > <config.log> > > ... > > ... > > $ ./configure --prefix=/mnt/g/Maths/sage-9.8/b4.0 > > > > ## --------- ## > > ## Platform. ## > > ## --------- ## > > > > hostname = PC1 > > uname -m = x86_64 > > uname -r = 4.4.0-17763-Microsoft > > uname -s = Linux > > uname -v = #2268-Microsoft Thu Oct 07 16:36:00 PST 2021 > > > > /usr/bin/uname -p = x86_64 > > /bin/uname -X = unknown > > > > /bin/arch = x86_64 > > /usr/bin/arch -k = unknown > > /usr/convex/getsysinfo = unknown > > /usr/bin/hostinfo = unknown > > /bin/machine = unknown > > /usr/bin/oslevel = unknown > > /bin/universe = unknown > > ... > > ... > > > > </config.log> > > ... > > ... > > > > <scipy-1.9.2.log> > > SciPy 1.9.2 > > > > User defined options > > Native files: > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/.mesonpy-native-file.ini > > debug : false > > optimization: 2 > > prefix : /mnt/g/Maths/sage-9.8/b4.0 > > > > Found ninja-1.10.0 at /usr/bin/ninja > > WARNING: custom_target '_cython_tree' has more than one output! Using > the first one. > > ... > > ... > > WARNING: custom_target '_cython_tree' has more than one output! Using > the first one. > > [1/1576] Generating scipy/generate-version with a custom command > > [2/1576] Generating scipy/_cython_tree with a custom command > > [3/1576] Generating scipy/_lib/_lib_pxd with a custom command > > [4/1576] Compiling C++ object > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > > FAILED: > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > > g++ -Iscipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p > -Iscipy/_lib/_uarray -I../../scipy/_lib/_uarray > -I/mnt/g/Maths/sage-9.8/b4.0/include/python3.10 -fvisibility=hidden > -fvisibility-inlines-hidden -fdiagnostics-color=always > -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 > -O2 -g -O2 -fPIC -Wno-terminate -Wno-unused-function -MD -MQ > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > > -MF > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o.d > > -o > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > > -c ../../scipy/_lib/_uarray/_uarray_dispatch.cxx > > In file included from /usr/include/features.h:461, > > from /usr/include/x86_64-linux-gnu/c++/9/bits/os_defines.h:39, > > from /usr/include/x86_64-linux-gnu/c++/9/bits/c++config.h:528, > > from /usr/include/c++/9/cassert:43, > > from ../../scipy/_lib/_uarray/small_dynamic_array.h:2, > > from ../../scipy/_lib/_uarray/_uarray_dispatch.cxx:1: > > /usr/include/x86_64-linux-gnu/sys/cdefs.h:453:10: fatal error: > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/bits/long-double.h: > > Invalid argument > > 453 | #include <bits/long-double.h> > > | ^~~~~~~~~~~~~~~~~~~~ > > compilation terminated. > > [5/1576] Generating scipy/generate-config with a custom command > > [6/1576] Generating > 'scipy/_lib/_test_deprecation_call.cpython-310-x86_64-linux-gnu.so.p/_test_deprecation_call.c'. > > FAILED: > scipy/_lib/_test_deprecation_call.cpython-310-x86_64-linux-gnu.so.p/_test_deprecation_call.c > > > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py > > ../../scipy/_lib/_test_deprecation_call.pyx > scipy/_lib/_test_deprecation_call.cpython-310-x86_64-linux-gnu.so.p/_test_deprecation_call.c > > /bin/sh: 1: > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py: > > not found > > [7/1576] Generating > 'scipy/_lib/_ccallback_c.cpython-310-x86_64-linux-gnu.so.p/_ccallback_c.c'. > > FAILED: > scipy/_lib/_ccallback_c.cpython-310-x86_64-linux-gnu.so.p/_ccallback_c.c > > > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py > > ../../scipy/_lib/_ccallback_c.pyx > scipy/_lib/_ccallback_c.cpython-310-x86_64-linux-gnu.so.p/_ccallback_c.c > > /bin/sh: 1: > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py: > > not found > > [8/1576] Compiling C object > scipy/_lib/_fpumode.cpython-310-x86_64-linux-gnu.so.p/_fpumode.c.o > > [9/1576] Compiling C object scipy/special/libcephes.a.p/cephes_bdtr.c.o > > FAILED: scipy/special/libcephes.a.p/cephes_bdtr.c.o > > gcc -Iscipy/special/libcephes.a.p -Iscipy/special -I../../scipy/special > -I/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/numpy/core/include > -Iscipy/_lib -I../../scipy/_lib -I../../scipy/_build_utils/src > -I/mnt/g/Maths/sage-9.8/b4.0/include/python3.10 -fdiagnostics-color=always > -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 > -Wno-unused-but-set-variable -Wno-unused-function -Wno-conversion > -Wno-misleading-indentation -Wno-incompatible-pointer-types > -Wno-unused-but-set-variable -g -O2 -fPIC -MD -MQ > scipy/special/libcephes.a.p/cephes_bdtr.c.o -MF > scipy/special/libcephes.a.p/cephes_bdtr.c.o.d -o > scipy/special/libcephes.a.p/cephes_bdtr.c.o -c > ../../scipy/special/cephes/bdtr.c > > In file included from > /mnt/g/Maths/sage-9.8/b4.0/include/python3.10/Python.h:30, > > from ../../scipy/special/cephes/mconf.h:56, > > from ../../scipy/special/cephes/bdtr.c:149: > > /usr/include/string.h:153:11: fatal error: > scipy/special/libcephes.a.p/bits/types/locale_t.h: Invalid argument > > 153 | # include <bits/types/locale_t.h> > > | ^~~~~~~~~~~~~~~~~~~~~~~ > > compilation terminated. > > [10/1576] Compiling C object > scipy/_lib/_test_ccallback.cpython-310-x86_64-linux-gnu.so.p/src__test_ccallback.c.o > > [11/1576] Compiling C++ object > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/vectorcall.cxx.o > > [12/1576] Compiling C object scipy/special/libcephes.a.p/cephes_airy.c.o > > [13/1576] Generating scipy/special/_ufuncs_pxi_pxd with a custom command > > ninja: build stopped: subcommand failed. > > + meson setup > --native-file=/mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/.mesonpy-native-file.ini > > -Ddebug=false -Doptimization=2 --prefix=/mnt/g/Maths/sage-9.8/b4.0 > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/.mesonpy-dqhuq2qq/build > > + meson compile > > Traceback (most recent call last): > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > > line 144, in prepare_metadata_for_build_wheel > > hook = backend.prepare_metadata_for_build_wheel > > AttributeError: module 'mesonpy' has no attribute > 'prepare_metadata_for_build_wheel' > > > > During handling of the above exception, another exception occurred: > > > > Traceback (most recent call last): > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > > line 351, in <module> > > main() > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > > line 333, in main > > json_out['return_val'] = hook(**hook_input['kwargs']) > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > > line 148, in prepare_metadata_for_build_wheel > > whl_basename = backend.build_wheel(metadata_directory, config_settings) > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > > line 987, in build_wheel > > return project.wheel(out).name > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > > line 935, in wheel > > wheel = self._wheel_builder.build(self._build_dir) > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > > line 576, in build > > self._project.build() # ensure project is built > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > > line 765, in build > > self._meson('compile') > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > > line 696, in _meson > > return self._proc('meson', *args) > > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > > line 691, in _proc > > subprocess.check_call(list(args)) > > File "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/subprocess.py", line > 369, in check_call > > raise CalledProcessError(retcode, cmd) > > subprocess.CalledProcessError: Command '['meson', 'compile']' returned > non-zero exit status 1. > > error: subprocess-exited-with-error > > > > × Preparing metadata (pyproject.toml) did not run successfully. > > ? exit code: 1 > > ??> See above for output. > > > > note: This error originates from a subprocess, and is likely not a > problem with pip. > > full command: /mnt/g/Maths/sage-9.8/b4.0/bin/python3 > /mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py > > prepare_metadata_for_build_wheel /tmp/tmpjme9vjd8 > > cwd: /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src > > Preparing metadata (pyproject.toml): finished with status 'error' > > error: metadata-generation-failed > > > > × Encountered error while generating package metadata. > > ??> See above for output. > > > > note: This is an issue with the package mentioned above, not pip. > > hint: See above for details. > > > ************************************************************************************************************************************************************************************************** > > Error building a wheel for scipy-1.9.2 > > > ************************************************************************************************************************************************************************************************** > > ... > > ... > > </scipy-1.9.2.log> > > On Sunday, November 27, 2022 at 12:32:43 AM UTC-5 John H Palmieri wrote: > >> > >> What OS? I'm guessing Mac OS, in which case you need the fix at > https://trac.sagemath.org/ticket/34658, or build 9.8.beta3 or wait for a > later beta release that includes the fix. > >> > >> -- > >> John > >> > >> > >> On Saturday, November 26, 2022 at 12:40:30 PM UTC-8 beingn...@gmail.com > wrote: > >>> > >>> Dear SageMath, > >>> > >>> scipy-1.92 was successfully built with the default configuration: > >>> > >>> ./configure > >>> > >>> SageMath was then built again with: > >>> > >>> ,/configure --prefix=/mnt/g/Maths/sage-9.8/b4.0 > >>> > >>> This new build failed at 'scipy-1.9.2'. Your help to debug and fix > this issue is much appreciated. > >>> Please find 'non-default-config.log', 'non-default-scipy-1.9.2.log' > and 'default-scipy-1.9.2.log' in the attached 'report.b4.0.7z' > >>> > >>> With best wishes and regards, > >>> > >>> phi > >>> > >>> > >>> > >>> > > -- > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-devel+...@googlegroups.com. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/f8c2f04c-a19b-4b5f-8efa-fa6e44b06fden%40googlegroups.com > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/29cb3c79-7f1f-43f5-b884-55cbe75841a5n%40googlegroups.com.
