On Sun, Nov 27, 2022 at 8:10 AM being nobody00 <beingnobod...@gmail.com> wrote: > > > What OS? > $ uname -a > Linux PC1 4.4.0-17763-Microsoft #2268-Microsoft Thu Oct 07 16:36:00 PST 2021 > x86_64 x86_64 x86_64 GNU/Linux >
this is a guest OS of WSL, as far as I know, and very old one (4+ y.o., and unsupported since early 2022, as far as Linux kernels go). Probably your WSL is old, too. Problably /mnt/g is (from yur Linux point of view) a filesystem of different to /home's type type, and the hell breaks loose there (old WSL versions were known to operate quite badly across different filesystems, not sure if that improved) > Please find appended below excerpts from 'config.log' and 'scipy-1.9.2.log'. > Maybe this is newly introduced after https://trac.sagemath.org/ticket/34658? > > FWIW, beta 4 was successfully built with the default prefix (aka root?): > > ./configure > > It is hoped that 'non-default-config.log', 'non-default-scipy-1.9.2.log' and > 'default-scipy-1.9.2.log' in the 'report.b4.0.7z' (attached in the > original post) were investigated. > > 'non-default' here means: > > $ ./configure --prefix=/mnt/g/Maths/sage-9.8/b4.0 > > Please advise if there are any other data is needed for the investigation. > > Best regards, > > phi > > <config.log> > ... > ... > $ ./configure --prefix=/mnt/g/Maths/sage-9.8/b4.0 > > ## --------- ## > ## Platform. ## > ## --------- ## > > hostname = PC1 > uname -m = x86_64 > uname -r = 4.4.0-17763-Microsoft > uname -s = Linux > uname -v = #2268-Microsoft Thu Oct 07 16:36:00 PST 2021 > > /usr/bin/uname -p = x86_64 > /bin/uname -X = unknown > > /bin/arch = x86_64 > /usr/bin/arch -k = unknown > /usr/convex/getsysinfo = unknown > /usr/bin/hostinfo = unknown > /bin/machine = unknown > /usr/bin/oslevel = unknown > /bin/universe = unknown > ... > ... > > </config.log> > ... > ... > > <scipy-1.9.2.log> > SciPy 1.9.2 > > User defined options > Native files: > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/.mesonpy-native-file.ini > debug : false > optimization: 2 > prefix : /mnt/g/Maths/sage-9.8/b4.0 > > Found ninja-1.10.0 at /usr/bin/ninja > WARNING: custom_target '_cython_tree' has more than one output! Using the > first one. > ... > ... > WARNING: custom_target '_cython_tree' has more than one output! Using the > first one. > [1/1576] Generating scipy/generate-version with a custom command > [2/1576] Generating scipy/_cython_tree with a custom command > [3/1576] Generating scipy/_lib/_lib_pxd with a custom command > [4/1576] Compiling C++ object > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > FAILED: > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > g++ -Iscipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p > -Iscipy/_lib/_uarray -I../../scipy/_lib/_uarray > -I/mnt/g/Maths/sage-9.8/b4.0/include/python3.10 -fvisibility=hidden > -fvisibility-inlines-hidden -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 > -Wall -Winvalid-pch -Wnon-virtual-dtor -std=c++14 -O2 -g -O2 -fPIC > -Wno-terminate -Wno-unused-function -MD -MQ > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > -MF > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o.d > -o > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/_uarray_dispatch.cxx.o > -c ../../scipy/_lib/_uarray/_uarray_dispatch.cxx > In file included from /usr/include/features.h:461, > from > /usr/include/x86_64-linux-gnu/c++/9/bits/os_defines.h:39, > from > /usr/include/x86_64-linux-gnu/c++/9/bits/c++config.h:528, > from /usr/include/c++/9/cassert:43, > from ../../scipy/_lib/_uarray/small_dynamic_array.h:2, > from ../../scipy/_lib/_uarray/_uarray_dispatch.cxx:1: > /usr/include/x86_64-linux-gnu/sys/cdefs.h:453:10: fatal error: > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/bits/long-double.h: > Invalid argument > 453 | #include <bits/long-double.h> > | ^~~~~~~~~~~~~~~~~~~~ > compilation terminated. > [5/1576] Generating scipy/generate-config with a custom command > [6/1576] Generating > 'scipy/_lib/_test_deprecation_call.cpython-310-x86_64-linux-gnu.so.p/_test_deprecation_call.c'. > FAILED: > scipy/_lib/_test_deprecation_call.cpython-310-x86_64-linux-gnu.so.p/_test_deprecation_call.c > > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py > ../../scipy/_lib/_test_deprecation_call.pyx > scipy/_lib/_test_deprecation_call.cpython-310-x86_64-linux-gnu.so.p/_test_deprecation_call.c > /bin/sh: 1: > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py: > not found > [7/1576] Generating > 'scipy/_lib/_ccallback_c.cpython-310-x86_64-linux-gnu.so.p/_ccallback_c.c'. > FAILED: > scipy/_lib/_ccallback_c.cpython-310-x86_64-linux-gnu.so.p/_ccallback_c.c > > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py > ../../scipy/_lib/_ccallback_c.pyx > scipy/_lib/_ccallback_c.cpython-310-x86_64-linux-gnu.so.p/_ccallback_c.c > /bin/sh: 1: > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/scipy/_build_utils/cythoner.py: > not found > [8/1576] Compiling C object > scipy/_lib/_fpumode.cpython-310-x86_64-linux-gnu.so.p/_fpumode.c.o > [9/1576] Compiling C object scipy/special/libcephes.a.p/cephes_bdtr.c.o > FAILED: scipy/special/libcephes.a.p/cephes_bdtr.c.o > gcc -Iscipy/special/libcephes.a.p -Iscipy/special -I../../scipy/special > -I/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/numpy/core/include > -Iscipy/_lib -I../../scipy/_lib -I../../scipy/_build_utils/src > -I/mnt/g/Maths/sage-9.8/b4.0/include/python3.10 -fdiagnostics-color=always > -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -std=c99 -O2 > -Wno-unused-but-set-variable -Wno-unused-function -Wno-conversion > -Wno-misleading-indentation -Wno-incompatible-pointer-types > -Wno-unused-but-set-variable -g -O2 -fPIC -MD -MQ > scipy/special/libcephes.a.p/cephes_bdtr.c.o -MF > scipy/special/libcephes.a.p/cephes_bdtr.c.o.d -o > scipy/special/libcephes.a.p/cephes_bdtr.c.o -c > ../../scipy/special/cephes/bdtr.c > In file included from > /mnt/g/Maths/sage-9.8/b4.0/include/python3.10/Python.h:30, > from ../../scipy/special/cephes/mconf.h:56, > from ../../scipy/special/cephes/bdtr.c:149: > /usr/include/string.h:153:11: fatal error: > scipy/special/libcephes.a.p/bits/types/locale_t.h: Invalid argument > 153 | # include <bits/types/locale_t.h> > | ^~~~~~~~~~~~~~~~~~~~~~~ > compilation terminated. > [10/1576] Compiling C object > scipy/_lib/_test_ccallback.cpython-310-x86_64-linux-gnu.so.p/src__test_ccallback.c.o > [11/1576] Compiling C++ object > scipy/_lib/_uarray/_uarray.cpython-310-x86_64-linux-gnu.so.p/vectorcall.cxx.o > [12/1576] Compiling C object scipy/special/libcephes.a.p/cephes_airy.c.o > [13/1576] Generating scipy/special/_ufuncs_pxi_pxd with a custom command > ninja: build stopped: subcommand failed. > + meson setup > --native-file=/mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/.mesonpy-native-file.ini > -Ddebug=false -Doptimization=2 --prefix=/mnt/g/Maths/sage-9.8/b4.0 > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src > /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src/.mesonpy-dqhuq2qq/build > + meson compile > Traceback (most recent call last): > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > line 144, in prepare_metadata_for_build_wheel > hook = backend.prepare_metadata_for_build_wheel > AttributeError: module 'mesonpy' has no attribute > 'prepare_metadata_for_build_wheel' > > During handling of the above exception, another exception occurred: > > Traceback (most recent call last): > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > line 351, in <module> > main() > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > line 333, in main > json_out['return_val'] = hook(**hook_input['kwargs']) > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", > line 148, in prepare_metadata_for_build_wheel > whl_basename = backend.build_wheel(metadata_directory, config_settings) > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > line 987, in build_wheel > return project.wheel(out).name > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > line 935, in wheel > wheel = self._wheel_builder.build(self._build_dir) > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > line 576, in build > self._project.build() # ensure project is built > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > line 765, in build > self._meson('compile') > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > line 696, in _meson > return self._proc('meson', *args) > File > "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/mesonpy/__init__.py", > line 691, in _proc > subprocess.check_call(list(args)) > File "/mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/subprocess.py", line 369, > in check_call > raise CalledProcessError(retcode, cmd) > subprocess.CalledProcessError: Command '['meson', 'compile']' returned > non-zero exit status 1. > error: subprocess-exited-with-error > > × Preparing metadata (pyproject.toml) did not run successfully. > ? exit code: 1 > ??> See above for output. > > note: This error originates from a subprocess, and is likely not a problem > with pip. > full command: /mnt/g/Maths/sage-9.8/b4.0/bin/python3 > /mnt/g/Maths/sage-9.8/b4.0/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py > prepare_metadata_for_build_wheel /tmp/tmpjme9vjd8 > cwd: /mnt/g/Maths/sage-9.8/b4.0/var/tmp/sage/build/scipy-1.9.2/src > Preparing metadata (pyproject.toml): finished with status 'error' > error: metadata-generation-failed > > × Encountered error while generating package metadata. > ??> See above for output. > > note: This is an issue with the package mentioned above, not pip. > hint: See above for details. > ************************************************************************************************************************************************************************************************** > Error building a wheel for scipy-1.9.2 > ************************************************************************************************************************************************************************************************** > ... > ... > </scipy-1.9.2.log> > On Sunday, November 27, 2022 at 12:32:43 AM UTC-5 John H Palmieri wrote: >> >> What OS? I'm guessing Mac OS, in which case you need the fix at >> https://trac.sagemath.org/ticket/34658, or build 9.8.beta3 or wait for a >> later beta release that includes the fix. >> >> -- >> John >> >> >> On Saturday, November 26, 2022 at 12:40:30 PM UTC-8 beingn...@gmail.com >> wrote: >>> >>> Dear SageMath, >>> >>> scipy-1.92 was successfully built with the default configuration: >>> >>> ./configure >>> >>> SageMath was then built again with: >>> >>> ,/configure --prefix=/mnt/g/Maths/sage-9.8/b4.0 >>> >>> This new build failed at 'scipy-1.9.2'. Your help to debug and fix this >>> issue is much appreciated. >>> Please find 'non-default-config.log', 'non-default-scipy-1.9.2.log' and >>> 'default-scipy-1.9.2.log' in the attached 'report.b4.0.7z' >>> >>> With best wishes and regards, >>> >>> phi >>> >>> >>> >>> > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/f8c2f04c-a19b-4b5f-8efa-fa6e44b06fden%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/CAAWYfq1UiX8ArixdEqA0Pb6fmw9mxedAPj4qGeX%2BV17JXTDK7A%40mail.gmail.com.
