(I've cc'd this to FriCAS since Axiom and FriCAS are mentioned below in reference to OS X.) On 8/10/07, Pete Chvany <[EMAIL PROTECTED]> wrote: > Hi William-- > > Shakedown cruise of SAGE 2.7.3 installation continues. I've got four > final optional packages I'm trying to set up, with various error > conditions. I've included my findings below for > > polymake > twistedweb > axiom > biopython >
Forget about twistedweb, since it's now included standard in SAGE anyways -- i.e., you already have it. Evidently, I neglected to remove it from the list of optional packages, but will do so for the next release. > ++++++++++++++++++ > > Errors building polymake: > > Making SAGE/Python scripts relocatable... > Making script relocatable > bzip2: (stdin) is not a bzip2 file. > tar: Child returned status 2 > tar: Error exit delayed from previous errors > Download the cddlib-094b.spkg and place it in '/usr/local/bin/sage/ > spkg/standard/' > > real 0m34.284s > user 0m13.400s > sys 0m13.931s > sage: An error occured while installing polymake-2.2.p2 > Please email William Stein <[EMAIL PROTECTED]> explaining the > problem and send him the relevant part of > of /usr/local/bin/sage/install.log. Don't send the whole thing. > If you want to try to fix the problem, yourself *don't* just cd to > /usr/local/bin/sage/spkg/build/polymake-2.2.p2 and type 'make'. > Instead (using bash) type "source local/bin/sage-env" from the directory > /usr/local/bin/sage > in order to set all environment variables correctly, then cd to > /usr/local/bin/sage/spkg/build/polymake-2.2.p2 > > **** > > The cddlib package IS in the correct location: > > [mathmac11:sage/spkg/standard] root# ls cdd* > cddlib-094b.spkg > [mathmac11:sage/spkg/standard] root# > > > ***** > > SAGE_ROOT is set: > > # Set SAGE_ROOT to the location of the sage install. > SAGE_ROOT="/usr/local/bin/sage" > > ran the sage-env command in bash from the main directory, cd'd to the > polymake directory. Confirmed that it should install polymake in the > default location it suggested. > > Error from the polymake build: > > ld -r -o cdd_interface.o cdd_interface-tmp.o ../../external/cdd/ > libcddgmp.a > ld: can't open: ../../external/cdd/libcddgmp.a (No such file or > directory, errno = 2) > make[2]: *** [cdd_interface.o] Error 1 > make[1]: *** [all] Error 2 > make: *** [all] Error 2 > > There is also a cddlib file in the spkg/build directory; I've looked > for something else to download from the optional spkg directory on > the SAGE web site but I'm not finding cddlib as a separate entity. That's definitely a bug. The problem resulted from the massive reorganization of the internal structure of the standard SAGE packages. I forgot that some of the optional packages build process depends on the internal structure of the standard packages. I've replicated the above problem and will be able to fix it. By the way, I hope you automate building all the optional SAGE packages. It would be a great contribution to SAGE if you could just do that every once in a while and report any problems you find. > +++++++++++++++++++++++++++++++++ > > Errors building twistedweb: No worries, that's in SAGE already now. > > ++++++++++++++++++++++++++ > > Errors with Axiom: > [...] I won't say anything further about this because: (1) My understanding is that Axiom has never been ported to OSX; they only support Linux and Windows. So it's shouldn't work on OS X. (2) FriCAS (a fork of Axiom) is very likely going to replace Axiom in SAGE. And my impression of the amazing skills of they guy who started the FriCAS project with all things related to build processes suggests FriCAS will support OS X in the near future. > cp: ../bin/gcl: No such file or directory > make[2]: *** [command] Error 1 > make[1]: *** [/usr/local/bin/sage/spkg/build/axiom4sage-0.1/build/ > powerpc-apple-darwin8.10.0/bin/gcl] Error 2 > make: *** [all-recursive] Error 1 > *********************************************************** > Failed to make Axiom. > *********************************************************** > Make sure you have the xorg-dev, gettext, and msgfmt libraries > installed. > > real 1m41.649s > user 0m24.137s > sys 1m3.966s > sage: An error occured while installing axiom4sage-0.1 > Please email William Stein <[EMAIL PROTECTED]> explaining the > problem and send him the relevant part of > of /usr/local/bin/sage/install.log. Don't send the whole thing. > If you want to try to fix the problem, yourself *don't* just cd to > /usr/local/bin/sage/spkg/build/axiom4sage-0.1 and type 'make'. > Instead (using bash) type "source local/bin/sage-env" from the directory > /usr/local/bin/sage > in order to set all environment variables correctly, then cd to > /usr/local/bin/sage/spkg/build/axiom4sage-0.1 > mathmac11:/usr/local/bin root# > > Changing to the specific Axiom build directory, and accepting > defaults for the following two queries: > > Reversed (or previously applied) patch detected! Assume -R? [n] > Apply anyway? [n] 0 > > Making all in src/lib > rm -f stamp > echo timestamp > stamp > Making all in lsp > 7 applying toploop patch to unixport/init_gcl.lsp > patching file init_gcl.lsp.in > Reversed (or previously applied) patch detected! Assume -R? [n] > Apply anyway? [n] > Skipping patch. > 1 out of 1 hunk ignored -- saving rejects to file init_gcl.lsp.in.rej > make[1]: *** [/usr/local/bin/sage/spkg/build/axiom4sage-0.1/build/ > powerpc-apple-darwin8.10.0/bin/gcl] Error 1 > make: *** [all-recursive] Error 1 > > Answering "y" to the question about previously applied patch and -R, > the process gets much further but fails with the same error about the > file /bin/gcl noted above: > > ++++++++++++++++++++++++++ > > biopython install: > > This has hung on me several times running, over the last couple of > days. Here's how it reports to the terminal screen this time: This is a known problem. We are trying to find a hack to get around it, but nobody has found one yet. I believe if you just hit return a few times when it appears to "hang", then it will contiue fine to the end of the build. > copying build/lib.macosx-10.3-ppc-2.5/mx/Tools/mxTools/mxTools.so -> / > usr/local/bin/sage/local/lib/python2.5/site-packages/mx/Tools/mxTools > copying build/lib.macosx-10.3-ppc-2.5/mx/Tools/mxTools/xmap.so -> / > usr/local/bin/sage/local/lib/python2.5/site-packages/mx/Tools/mxTools > writing byte-compilation script '/tmp/tmpYffmvO.py' > /usr/local/bin/sage/local/bin/python -O /tmp/tmpYffmvO.py > removing /tmp/tmpYffmvO.py > running install_data > running install_egg_info > Removing /usr/local/bin/sage/local/lib/python2.5/site-packages/ > egenix_mx_base-2.0.6-py2.5.egg-info > Writing /usr/local/bin/sage/local/lib/python2.5/site-packages/ > egenix_mx_base-2.0.6-py2.5.egg-info > running install > > It will sit there for hours. > > ++++++++++++++++++++++++ > > Thanks for any info or suggestions. > > Pete > -- William Stein Associate Professor of Mathematics University of Washington http://www.williamstein.org --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~----------~----~----~----~------~----~------~--~---
