On 8/10/07, Pete Chvany <[EMAIL PROTECTED]> wrote: > William-- > > Thanks, I will work through these issues and let you know what the > results are.
Actually, I think in each case the result is "I (william) need to fix something", so there really isn't much for you to do at present. > I've been meaning to make a more formal set of installation > instructions and scripts for a while now--partly for my own sanity, > partly so if Arthur has to take over at some point, the ins and outs > will be clearer, and partly in hopes of contributing to the SAGE > community if I come up with anything elegant or useful, either in > scripting or documentation. That's partly why I'm being so detailed > in my notes and questions on this build ... I have more time than > usual, since the year hasn't started yet. Great, many thanks! > > Thanks again. > > Pete > > On Aug 10, 2007, at 11:03 AM, William Stein wrote: > > > (I've cc'd this to FriCAS since Axiom and FriCAS are mentioned below > > in reference to OS X.) > > On 8/10/07, Pete Chvany <[EMAIL PROTECTED]> wrote: > >> Hi William-- > >> > >> Shakedown cruise of SAGE 2.7.3 installation continues. I've got four > >> final optional packages I'm trying to set up, with various error > >> conditions. I've included my findings below for > >> > >> polymake > >> twistedweb > >> axiom > >> biopython > >> > > > > Forget about twistedweb, since it's now included standard in SAGE > > anyways -- i.e., you already have it. Evidently, I neglected to > > remove it > > from the list of optional packages, but will do so for the next > > release. > > > > > >> ++++++++++++++++++ > >> > >> Errors building polymake: > >> > >> Making SAGE/Python scripts relocatable... > >> Making script relocatable > >> bzip2: (stdin) is not a bzip2 file. > >> tar: Child returned status 2 > >> tar: Error exit delayed from previous errors > >> Download the cddlib-094b.spkg and place it in '/usr/local/bin/sage/ > >> spkg/standard/' > >> > >> real 0m34.284s > >> user 0m13.400s > >> sys 0m13.931s > >> sage: An error occured while installing polymake-2.2.p2 > >> Please email William Stein <[EMAIL PROTECTED]> explaining the > >> problem and send him the relevant part of > >> of /usr/local/bin/sage/install.log. Don't send the whole thing. > >> If you want to try to fix the problem, yourself *don't* just cd to > >> /usr/local/bin/sage/spkg/build/polymake-2.2.p2 and type 'make'. > >> Instead (using bash) type "source local/bin/sage-env" from the > >> directory > >> /usr/local/bin/sage > >> in order to set all environment variables correctly, then cd to > >> /usr/local/bin/sage/spkg/build/polymake-2.2.p2 > >> > >> **** > >> > >> The cddlib package IS in the correct location: > >> > >> [mathmac11:sage/spkg/standard] root# ls cdd* > >> cddlib-094b.spkg > >> [mathmac11:sage/spkg/standard] root# > > > > > >> > >> > >> ***** > >> > >> SAGE_ROOT is set: > >> > >> # Set SAGE_ROOT to the location of the sage install. > >> SAGE_ROOT="/usr/local/bin/sage" > >> > >> ran the sage-env command in bash from the main directory, cd'd to the > >> polymake directory. Confirmed that it should install polymake in the > >> default location it suggested. > >> > >> Error from the polymake build: > >> > >> ld -r -o cdd_interface.o cdd_interface-tmp.o ../../external/cdd/ > >> libcddgmp.a > >> ld: can't open: ../../external/cdd/libcddgmp.a (No such file or > >> directory, errno = 2) > >> make[2]: *** [cdd_interface.o] Error 1 > >> make[1]: *** [all] Error 2 > >> make: *** [all] Error 2 > >> > >> There is also a cddlib file in the spkg/build directory; I've looked > >> for something else to download from the optional spkg directory on > >> the SAGE web site but I'm not finding cddlib as a separate entity. > > > > That's definitely a bug. The problem resulted from the > > massive reorganization of the internal structure of the standard > > SAGE packages. I forgot that some of the optional packages > > build process depends on the internal structure of the standard > > packages. I've replicated the above problem and will be able > > to fix it. > > > > By the way, I hope you automate building all the optional SAGE > > packages. It would be a great contribution to SAGE if you > > could just do that every once in a while and report any problems > > you find. > > > >> +++++++++++++++++++++++++++++++++ > >> > >> Errors building twistedweb: > > > > No worries, that's in SAGE already now. > >> > >> ++++++++++++++++++++++++++ > >> > >> Errors with Axiom: > >> > > [...] > > > > I won't say anything further about this because: > > (1) My understanding is that Axiom has never been ported to OSX; > > they only support > > Linux and Windows. So it's shouldn't work on OS X. > > (2) FriCAS (a fork of Axiom) is very likely going to replace Axiom > > in SAGE. And > > my impression of the amazing skills of they guy who started the > > FriCAS project > > with all things related to build processes suggests FriCAS will > > support OS X > > in the near future. > > > >> cp: ../bin/gcl: No such file or directory > >> make[2]: *** [command] Error 1 > >> make[1]: *** [/usr/local/bin/sage/spkg/build/axiom4sage-0.1/build/ > >> powerpc-apple-darwin8.10.0/bin/gcl] Error 2 > >> make: *** [all-recursive] Error 1 > >> *********************************************************** > >> Failed to make Axiom. > >> *********************************************************** > >> Make sure you have the xorg-dev, gettext, and msgfmt libraries > >> installed. > >> > >> real 1m41.649s > >> user 0m24.137s > >> sys 1m3.966s > >> sage: An error occured while installing axiom4sage-0.1 > >> Please email William Stein <[EMAIL PROTECTED]> explaining the > >> problem and send him the relevant part of > >> of /usr/local/bin/sage/install.log. Don't send the whole thing. > >> If you want to try to fix the problem, yourself *don't* just cd to > >> /usr/local/bin/sage/spkg/build/axiom4sage-0.1 and type 'make'. > >> Instead (using bash) type "source local/bin/sage-env" from the > >> directory > >> /usr/local/bin/sage > >> in order to set all environment variables correctly, then cd to > >> /usr/local/bin/sage/spkg/build/axiom4sage-0.1 > >> mathmac11:/usr/local/bin root# > >> > >> Changing to the specific Axiom build directory, and accepting > >> defaults for the following two queries: > >> > >> Reversed (or previously applied) patch detected! Assume -R? [n] > >> Apply anyway? [n] 0 > >> > >> Making all in src/lib > >> rm -f stamp > >> echo timestamp > stamp > >> Making all in lsp > >> 7 applying toploop patch to unixport/init_gcl.lsp > >> patching file init_gcl.lsp.in > >> Reversed (or previously applied) patch detected! Assume -R? [n] > >> Apply anyway? [n] > >> Skipping patch. > >> 1 out of 1 hunk ignored -- saving rejects to file init_gcl.lsp.in.rej > >> make[1]: *** [/usr/local/bin/sage/spkg/build/axiom4sage-0.1/build/ > >> powerpc-apple-darwin8.10.0/bin/gcl] Error 1 > >> make: *** [all-recursive] Error 1 > >> > >> Answering "y" to the question about previously applied patch and -R, > >> the process gets much further but fails with the same error about the > >> file /bin/gcl noted above: > >> > >> ++++++++++++++++++++++++++ > >> > >> biopython install: > >> > >> This has hung on me several times running, over the last couple of > >> days. Here's how it reports to the terminal screen this time: > > > > This is a known problem. We are trying to find a hack to get > > around it, > > but nobody has found one yet. I believe if you just hit return a few > > times when it appears to "hang", then it will contiue fine to the end > > of the build. > > > >> copying build/lib.macosx-10.3-ppc-2.5/mx/Tools/mxTools/mxTools.so - > >> > / > >> usr/local/bin/sage/local/lib/python2.5/site-packages/mx/Tools/mxTools > >> copying build/lib.macosx-10.3-ppc-2.5/mx/Tools/mxTools/xmap.so -> / > >> usr/local/bin/sage/local/lib/python2.5/site-packages/mx/Tools/mxTools > >> writing byte-compilation script '/tmp/tmpYffmvO.py' > >> /usr/local/bin/sage/local/bin/python -O /tmp/tmpYffmvO.py > >> removing /tmp/tmpYffmvO.py > >> running install_data > >> running install_egg_info > >> Removing /usr/local/bin/sage/local/lib/python2.5/site-packages/ > >> egenix_mx_base-2.0.6-py2.5.egg-info > >> Writing /usr/local/bin/sage/local/lib/python2.5/site-packages/ > >> egenix_mx_base-2.0.6-py2.5.egg-info > >> running install > >> > >> It will sit there for hours. > >> > >> ++++++++++++++++++++++++ > >> > >> Thanks for any info or suggestions. > >> > >> Pete > >> > > > > > > -- > > William Stein > > Associate Professor of Mathematics > > University of Washington > > http://www.williamstein.org > > -- William Stein Associate Professor of Mathematics University of Washington http://www.williamstein.org --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~----------~----~----~----~------~----~------~--~---
