There's a sorting bug in 2.6.1 that can occur when --relative is used that can make it update files incorrectly (since the file list is out of order, rsync asks for the wrong file's data).
** Do not use --relative (-R) in 2.6.1. **
** Don't forget that --files-from sets --relative by default. **
Rsync 2.6.2 will be released very soon to fix this. Until then, either
avoid --relative, fall back to 2.6.0, or apply this patch to the 2.6.1
source:
http://rsync.samba.org/sort.patch
..wayne..
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