On 2012-06-28 07:21, Yair Benita wrote: > Hi All, > I am trying to install rpy2 (2.2.6) on mac os x 10.6.8 with python 2.7 and R > 2.14.1. > I think all my env variables are correct but I still get the underlying > error. I think I previously solved it by forcing it to compile with arch > x86_64 - but I can't remember what I did.
One good reason to share fixes to issues with the community (so it acts as collective memory ;-) ). At the moment I don't have OS X-10.6.8 nearby. Can you locate where are Rconfig.h or Rversion.h ? L. > Can anyone help? > > Thanks, > Yair > > ~$ easy_install rpy2 > Searching for rpy2 > Reading http://pypi.python.org/simple/rpy2/ > Reading http://rpy.sourceforge.net > Best match: rpy2 2.2.6 > Downloading > http://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz#md5=32d73a3e4acb915ce15d958c9092dcb8 > Processing rpy2-2.2.6.tar.gz > Writing > /var/folders/HU/HUM+PVEdFU8FgIU8u5qB+k+++TI/-Tmp-/easy_install-UIkMqK/rpy2-2.2.6/setup.cfg > Running rpy2-2.2.6/setup.py -q bdist_egg --dist-dir > /var/folders/HU/HUM+PVEdFU8FgIU8u5qB+k+++TI/-Tmp-/easy_install-UIkMqK/rpy2-2.2.6/egg-dist-tmp-G4GNIC > Configuration for R as a library: > include_dirs: ('/Library/Frameworks/R.framework/Resources/include', > '/Library/Frameworks/R.framework/Resources/include/x86_64') > libraries: ('Rblas', 'Rlapack') > library_dirs: ('/Library/Frameworks/R.framework/Resources/lib/x86_64',) > extra_link_args: ('-framework R', '-F/Library/Frameworks/R.framework/..') > # OSX-specific (included in extra_link_args) > framework_dirs: ('-F/Library/Frameworks/R.framework/..',) > frameworks: ('-framework R',) > warning: no previously-included files matching '*patch*' found anywhere in > distribution > warning: no previously-included files matching '*diff*' found anywhere in > distribution > warning: no previously-included files matching '.hg' found anywhere in > distribution > no previously-included directories found matching 'dist' > In file included from ./rpy/rinterface/_rinterface.c:63: > /Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: warning: > function declaration isn’t a prototype > In file included from ./rpy/rinterface/_rinterface.c:79: > /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: > warning: function declaration isn’t a prototype > In file included from ./rpy/rinterface/_rinterface.c:132: > ./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’: > ./rpy/rinterface/sequence.c:542: warning: unused variable ‘sexp_item’ > ./rpy/rinterface/sequence.c:542: warning: unused variable ‘tmp’ > ./rpy/rinterface/sequence.c:541: warning: unused variable ‘vs’ > ./rpy/rinterface/sequence.c:478: warning: unused variable ‘self_typeof’ > ./rpy/rinterface/_rinterface.c: At top level: > ./rpy/rinterface/sequence.c:2173: warning: ‘ComplexVectorSexp_AsSexp’ defined > but not used > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowFiles’: > ./rpy/rinterface/_rinterface.c:748: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_FlushConsole’: > ./rpy/rinterface/_rinterface.c:602: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ReadConsole’: > ./rpy/rinterface/_rinterface.c:470: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsole’: > ./rpy/rinterface/_rinterface.c:328: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowMessage’: > ./rpy/rinterface/_rinterface.c:402: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_CleanUp’: > ./rpy/rinterface/_rinterface.c:896: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ChooseFile’: > ./rpy/rinterface/_rinterface.c:646: warning: ‘gstate’ may be used > uninitialized in this function > In file included from > /Library/Frameworks/R.framework/Resources/include/R.h:34, > from ./rpy/rinterface/_rinterface.c:61: > /Library/Frameworks/R.framework/Resources/include/Rconfig.h:5:25: error: > ppc/Rconfig.h: No such file or directory > In file included from ./rpy/rinterface/_rinterface.c:62: > /Library/Frameworks/R.framework/Resources/include/Rversion.h:5:26: error: > ppc/Rversion.h: No such file or directory > In file included from ./rpy/rinterface/_rinterface.c:63: > /Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: warning: > function declaration isn’t a prototype > In file included from ./rpy/rinterface/_rinterface.c:79: > /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: > warning: function declaration isn’t a prototype > In file included from ./rpy/rinterface/_rinterface.c:110: > ./rpy/rinterface/r_utils.h:13: error: ‘R_MAJOR’ undeclared here (not in a > function) > ./rpy/rinterface/r_utils.h:13: error: ‘R_MINOR’ undeclared here (not in a > function) > ./rpy/rinterface/r_utils.h:13: error: ‘R_STATUS’ undeclared here (not in a > function) > ./rpy/rinterface/r_utils.h:14: error: ‘R_SVN_REVISION’ undeclared here (not > in a function) > In file included from ./rpy/rinterface/_rinterface.c:132: > ./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’: > ./rpy/rinterface/sequence.c:542: warning: unused variable ‘sexp_item’ > ./rpy/rinterface/sequence.c:542: warning: unused variable ‘tmp’ > ./rpy/rinterface/sequence.c:541: warning: unused variable ‘vs’ > ./rpy/rinterface/sequence.c:478: warning: unused variable ‘self_typeof’ > In file included from ./rpy/rinterface/_rinterface.c:63: > /Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: warning: > function declaration isn’t a prototype > In file included from ./rpy/rinterface/_rinterface.c:79: > /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: > warning: function declaration isn’t a prototype > In file included from ./rpy/rinterface/_rinterface.c:132: > ./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’: > ./rpy/rinterface/sequence.c:542: warning: unused variable ‘sexp_item’ > ./rpy/rinterface/sequence.c:542: warning: unused variable ‘tmp’ > ./rpy/rinterface/sequence.c:541: warning: unused variable ‘vs’ > ./rpy/rinterface/sequence.c:478: warning: unused variable ‘self_typeof’ > ./rpy/rinterface/_rinterface.c: At top level: > ./rpy/rinterface/sequence.c:2173: warning: ‘ComplexVectorSexp_AsSexp’ defined > but not used > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowFiles’: > ./rpy/rinterface/_rinterface.c:748: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_FlushConsole’: > ./rpy/rinterface/_rinterface.c:602: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ReadConsole’: > ./rpy/rinterface/_rinterface.c:470: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsole’: > ./rpy/rinterface/_rinterface.c:328: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowMessage’: > ./rpy/rinterface/_rinterface.c:402: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_CleanUp’: > ./rpy/rinterface/_rinterface.c:896: warning: ‘gstate’ may be used > uninitialized in this function > ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ChooseFile’: > ./rpy/rinterface/_rinterface.c:646: warning: ‘gstate’ may be used > uninitialized in this function > lipo: can't open input file: > /var/folders/HU/HUM+PVEdFU8FgIU8u5qB+k+++TI/-Tmp-//cclnDZS2.out (No such file > or directory) > error: Setup script exited with error: command 'gcc-4.2' failed with exit > status 1 > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > rpy-list mailing list > rpy-list@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rpy-list ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
