Support Requests item #2821065, was opened at 2009-07-13 20:16 Message generated for change (Comment added) made by lgautier You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=453022&aid=2821065&group_id=48422
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Install Problem (example) Group: None >Status: Closed Priority: 5 Private: No Submitted By: Mark Moll (mamoll) >Assigned to: lgautier (lgautier) Summary: installing RPy on OS X with deps satisfied through MacPorts Initial Comment: I have R and python2.6 installed through MacPorts. When I run "python setup.py build" in the rpy2-2.0.6 directory, I get the following error: creating build/temp.macosx-10.5-i386-2.6/rpy/rinterface /usr/bin/gcc-4.0 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -DR_INTERFACE_PTRS=1 -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1 -I/opt/local/lib/R/include -Irpy/rinterface -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c rpy/rinterface/array.c -o build/temp.macosx-10.5-i386-2.6/rpy/rinterface/array.o /usr/bin/gcc-4.0 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -DR_INTERFACE_PTRS=1 -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1 -I/opt/local/lib/R/include -Irpy/rinterface -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c rpy/rinterface/r_utils.c -o build/temp.macosx-10.5-i386-2.6/rpy/rinterface/r_utils.o /usr/bin/gcc-4.0 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -DR_INTERFACE_PTRS=1 -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1 -I/opt/local/lib/R/include -Irpy/rinterface -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c rpy/rinterface/rinterface.c -o build/temp.macosx-10.5-i386-2.6/rpy/rinterface/rinterface.o In file included from rpy/rinterface/rinterface.c:69: /opt/local/lib/R/include/R_ext/Rdynload.h:26: warning: function declaration isn’t a prototype rpy/rinterface/rinterface.c:104: warning: ‘interrupt_R’ defined but not used rpy/rinterface/rinterface.c:2676: warning: ‘externalMethods’ defined but not used /usr/bin/gcc-4.0 -L/opt/local/lib -bundle -undefined dynamic_lookup build/temp.macosx-10.5-i386-2.6/rpy/rinterface/array.o build/temp.macosx-10.5-i386-2.6/rpy/rinterface/r_utils.o build/temp.macosx-10.5-i386-2.6/rpy/rinterface/rinterface.o -L/opt/local/lib/R/lib -L/opt/local/lib/R/modules -L/opt/local/lib/R/lib -L/opt/local/lib/R/modules -lR -o build/lib.macosx-10.5-i386-2.6/rpy2/rinterface/rinterface.so -L/opt/local/lib/R/lib -lR -dylib_file libRblas.dylib:/opt/local/lib/R/lib/libRblas.dylib -L/opt/local/lib/R/lib -lRlapack -L/opt/local/lib/R/lib -lRblas ld: library not found for -lR -dylib_file libRblas.dylib:/opt/local/lib/R/lib/libRblas.dylib collect2: ld returned 1 exit status error: command '/usr/bin/gcc-4.0' failed with exit status 1 If I copy/paste the last gcc command on the command line I do *not* get an error. How could this be? ---------------------------------------------------------------------- >Comment By: lgautier (lgautier) Date: 2012-03-09 04:30 Message: The 2.0.x series for rpy2 is no longer developed or supported. More recent versions will hopefully behave better (folks at ActiveState appear to be able to build binaries straight from the source on Pypi - http://code.activestate.com/pypm/rpy2/ ) ---------------------------------------------------------------------- Comment By: Nobody/Anonymous (nobody) Date: 2012-03-09 04:03 Message: zz6wRq Great, thanks for sharing this article post.Really looking forward to read more. Much obliged. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=453022&aid=2821065&group_id=48422 ------------------------------------------------------------------------------ Virtualization & Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ _______________________________________________ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
