On 2011-10-19 10:10, Johannes Radinger wrote: > Hello... > > For your information: I am working with > R version 2.13.1 (2011-07-08) > > Anyway I found a hint in the internet at > (http://code.google.com/p/pyrit/issues/detail?id=337) > and tried to build and install with: > > env ARCHFLAGS="-arch i386 -arch x86_64" python setup.py build install
Thanks. I'll try to see if I can get setup.py to do that automagically. > > > It seems that works! I tried the mentioned tests and here the output: > > (...) >>>> import unittest >>>> tr = unittest.TextTestRunner(verbosity = 1) >>>> suite = rpy2.tests.suite() >>>> tr.run(suite) > ...................................................................................................................................................................................................................................................................................................................................... > ---------------------------------------------------------------------- > Ran 326 tests in 4.117s > > OK > <unittest._TextTestResult run=326 errors=0 failures=0> > > > > So is now everything correctly installed? And will it work now? It seems so. Let us know if this turns out not to be the case. L. > > Thank you very much! > > /Johannes > > -------- Original-Nachricht -------- >> Datum: Wed, 19 Oct 2011 09:21:13 +0200 >> Von: Laurent Gautier<lgaut...@gmail.com> >> An: Johannes Radinger<jradin...@gmx.at> >> CC: "RPy help, support and design discussion >> list"<rpy-list@lists.sourceforge.net> >> Betreff: Re: [Rpy] fail install on Mac OS X 10.6.8 >> With a new version of gcc, the outcome should at least a bit different >> (even >> if on the version number in the console output). >> Did you mention the version of R you are trying to build against ? >> On Oct 19, 2011 6:10 AM, "Johannes Radinger"<jradin...@gmx.at> wrote: >> >>> Hello again, >>> >>> I checked my GCC version on my Mac again and it is: >>> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 And that >>> is the most up tp date version for my operating system. >>> >>> I tried also to install rpy2 via easy_install but encounter >>> the same error. >>> >>> So what to do? >>> I found following page. Maybe that is a hint to the solution, >>> but I am not sure what I should do in my case: >>> >>> >> http://stackoverflow.com/questions/2211387/python-build-problem-on-mac-os-10-6-snow-leopard >>> /johannes >>> >>> >>> >>> >>> Am 18.10.2011 um 23:01 schrieb Laurent Gautier: >>> >>> Wouldn't the following line provide a hint about where the problem is ? >>> >>> /usr/include/AvailabilityMacros.h:108:14: warning: #warning Building for >>> Intel with Mac OS X Deployment Target< 10.4 is invalid. >>> >>> >>> Wasn't GCC4.0 the default compiler on Mac OS X 10.4 ? >>> >>> >>> On 2011-10-18 22:34, Johannes Radinger wrote: >>> >>> Hello, >>> >>> I am very new to rpy and I just wanted >>> to install the rpy2 package on my Mac OS X 10.6.8 >>> with the python setup.py build install but I fail. >>> >>> You can see the error-message below! >>> It seems that the gcc-4.0 failed with exit status 1, for >>> whatever that means. As I am still very new >>> to python and compiling etc. I don't know how to >>> handle this error... What should I do? What >>> should I check? >>> >>> Thank you very much >>> >>> /Johannes >>> >>> noname:rpy2-2.2.1 admin$ python setup.py build install >>> running build >>> running build_py >>> running build_ext >>> Configuration for R as a library: >>> include_dirs: ('/Library/Frameworks/R.framework/Resources/include', >>> '/Library/Frameworks/R.framework/Resources/include/x86_64') >>> libraries: ('Rblas', 'Rlapack') >>> library_dirs: >> ('/Library/Frameworks/R.framework/Resources/lib/x86_64',) >>> extra_link_args: ('-framework R', >> '-F/Library/Frameworks/R.framework/..') >>> # OSX-specific (included in extra_link_args) >>> framework_dirs: ('-F/Library/Frameworks/R.framework/..',) >>> frameworks: ('-framework R',) >>> building 'rpy2.rinterface._rinterface' extension >>> gcc-4.0 -fno-strict-aliasing -fno-common -dynamic -arch ppc -arch i386 >> -g >>> -O2 -DNDEBUG -g -O3 -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 >>> -DCSTACK_DEFNS=1 -DRIF_HAS_RSIGHAND=1 -I./rpy/rinterface >>> -I/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 >>> -I/Library/Frameworks/R.framework/Resources/include >>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -c >>> ./rpy/rinterface/_rinterface.c -o >>> build/temp.macosx-10.3-fat-2.6/./rpy/rinterface/_rinterface.o >>> In file included from /usr/include/architecture/i386/math.h:626, >>> from /usr/include/math.h:28, >>> from >>> >> /Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/pyport.h:235, >>> from >>> >> /Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:58, >>> from ./rpy/rinterface/_rinterface.c:55: >>> /usr/include/AvailabilityMacros.h:108:14: warning: #warning Building for >>> Intel with Mac OS X Deployment Target< 10.4 is invalid. >>> In file included from >>> /Library/Frameworks/R.framework/Resources/include/R.h:34, >>> from ./rpy/rinterface/_rinterface.c:61: >>> /Library/Frameworks/R.framework/Resources/include/Rconfig.h:5:25: error: >>> ppc/Rconfig.h: No such file or directory >>> In file included from ./rpy/rinterface/_rinterface.c:62: >>> /Library/Frameworks/R.framework/Resources/include/Rversion.h:5:26: >> error: >>> ppc/Rversion.h: No such file or directory >>> In file included from ./rpy/rinterface/_rinterface.c:100: >>> ./rpy/rinterface/r_utils.h:13: error: ‘R_MAJOR’ undeclared >> here (not in >>> a function) >>> ./rpy/rinterface/r_utils.h:13: error: ‘R_MINOR’ undeclared >> here (not in >>> a function) >>> ./rpy/rinterface/r_utils.h:13: error: ‘R_STATUS’ undeclared >> here (not >>> in a function) >>> ./rpy/rinterface/r_utils.h:14: error: ‘R_SVN_REVISION’ >> undeclared here >>> (not in a function) >>> lipo: can't figure out the architecture type of: /var/tmp//ccPk52r1.out >>> error: command 'gcc-4.0' failed with exit status 1 >>> >>> >>> >>> >> ------------------------------------------------------------------------------ >>> All the data continuously generated in your IT infrastructure contains a >>> definitive record of customers, application performance, security >>> threats, fraudulent activity and more. Splunk takes this data and makes >>> sense of it. Business sense. IT sense. Common >> sense.http://p.sf.net/sfu/splunk-d2d-oct >>> >>> >>> _______________________________________________ >>> rpy-list mailing >> listrpy-list@lists.sourceforge.nethttps://lists.sourceforge.net/lists/listinfo/rpy-list >>> >>> >>> ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
