Hi List,
I try to install rpy2-2.1 package from the setup.py script, which
throws up compilation errors as below. I am using Arch Linux 64 bit.
Any way to get round the problem?
Yo
----
running install
running build
running build_py
running build_ext
building 'rpy2.rinterface.rinterface' extension
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -g -fwrapv -O3
-Wall -Wstrict-prototypes -march=x86-64 -mtune=generic -O2 -pipe -fPIC
-DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DCSTACK_DEFNS=1
-DRIF_HAS_RSIGHAND=1 -Irpy/rinterface -I/usr/include/python3.2mu
-I/usr/include/R/ -c rpy/rinterface/rinterface.c -o
build/temp.linux-x86_64-3.2/rpy/rinterface/rinterface.o
-L/usr/lib/R/lib -lR -llapack -lblas
In file included from /usr/include/python3.2mu/Python.h:8:0,
from rpy/rinterface/rinterface.c:55:
/usr/include/python3.2mu/pyconfig.h:1170:0: warning: "_POSIX_C_SOURCE"
redefined [enabled by default]
/usr/include/features.h:215:0: note: this is the location of the
previous definition
In file included from rpy/rinterface/rinterface.c:62:0:
/usr/include/R/Rinternals.h:657:1: warning: function declaration isn’t
a prototype [-Wstrict-prototypes]
In file included from rpy/rinterface/rinterface.c:74:0:
/usr/include/R/R_ext/Rdynload.h:26:1: warning: function declaration
isn’t a prototype [-Wstrict-prototypes]
rpy/rinterface/rinterface.c:86:1: error: unknown type name ‘staticforward’
rpy/rinterface/rinterface.c:86:23: error: expected ‘=’, ‘,’, ‘;’,
‘asm’ or ‘__attribute__’ before ‘*’ token
In file included from rpy/rinterface/rinterface.c:100:0:
rpy/rinterface/na_values.c: In function ‘NAInteger_repr’:
rpy/rinterface/na_values.c:14:5: warning: implicit declaration of
function ‘PyString_FromString’ [-Wimplicit-function-declaration]
[... hundreds of near-identical lines ...]
rpy/rinterface/na_values.c:14:10: warning: assignment makes pointer
from integer without a cast [enabled by default]
rpy/rinterface/na_values.c: In function ‘NA_str’:
rpy/rinterface/na_values.c:25:10: warning: assignment makes pointer
from integer without a cast [enabled by default]
rpy/rinterface/na_values.c: At top level:
rpy/rinterface/buffer.c:208:1: warning: ‘VectorSexp_getwritebuf’
defined but not used [-Wunused-function]
rpy/rinterface/buffer.c:216:1: warning: ‘VectorSexp_getcharbuf’
defined but not used [-Wunused-function]
rpy/rinterface/rinterface.c:2774:28: warning: ‘externalMethods’
defined but not used [-Wunused-variable]
error: command 'gcc' failed with exit status 1
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